Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 2582.7 1302 100.0
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1714.1 1303 68.0
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1679.5 1292 66.5
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1658.7 1292 66.1
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1598.9 1305 63.8
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1550.4 1300 62.1
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1515.7 1313 60.1
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1494.6 1301 58.8
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1468.4 1322 58.4
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1453.3 1286 58.7
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1447.6 1296 59.0
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1446.0 1323 57.7
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1445.3 1309 56.7
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1436.8 1305 57.3
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1419.4 1303 57.6
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1414.8 1295 57.1
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1411.4 1299 57.0
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1395.9 1311 56.1
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1392.1 1313 55.9
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1391.7 1306 56.2
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1390.2 1306 55.9
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1390.2 1302 57.3
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1389.0 1311 55.8
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1385.9 1311 55.8
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1382.9 1299 56.3
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1382.9 1317 55.0
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1381.3 1317 55.5
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1379.0 1307 55.2
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1378.2 1291 55.7
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1377.8 1324 54.7
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1375.9 1290 55.3
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1373.6 1318 54.6
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1372.1 1290 55.3
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1370.9 1290 55.2
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1370.1 1323 54.3
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1366.7 1304 54.8
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1365.1 1293 55.3
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1360.9 1323 54.0
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1360.5 1310 54.9
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1360.1 1297 55.1
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1357.4 1301 55.0
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1355.9 1314 54.3
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1350.9 1312 54.3
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1345.1 1300 54.0
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1344.3 1303 54.3
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1337.4 1306 54.9
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1335.9 1323 53.7
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1333.2 1302 54.2
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1329.7 1219 57.3
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1327.8 1306 54.6
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1326.6 1309 52.9
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1326.2 1296 53.5
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1325.5 1304 53.5
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1325.1 1310 52.6
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1323.5 1303 53.5
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1320.8 1155 59.0
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1319.3 1319 52.6
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1317.4 1298 53.9
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1313.5 1298 53.1
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1309.3 1311 53.0
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1307.7 1316 53.0
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1304.7 1303 52.9
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1302.7 1308 52.9
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1291.9 1308 53.0
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1291.6 1303 52.7
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1291.2 1311 52.3
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1290.0 1315 52.3
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1285.0 1308 53.4
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1284.6 1304 53.1
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1282.7 1345 51.4
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1281.9 1199 56.5
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1279.6 1310 52.1
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1275.8 1307 51.6
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1275.0 1310 51.8
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1273.1 1316 51.8
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1271.9 1307 52.1
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1270.4 1298 50.9
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1263.8 1188 56.4
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1261.9 1298 50.8
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1261.5 1306 51.9
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1253.4 1297 52.4
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1238.4 1315 51.6
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1222.6 1146 57.0
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1221.1 1304 50.7
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1217.2 1294 50.7
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1213.4 1298 49.5
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1183.3 1308 48.3
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1180.2 1291 51.1
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1164.4 1340 48.1
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1124.8 1311 49.4
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1095.1 1163 51.4
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1083.2 1163 50.3
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 5.2e-310 1068.1 1342 45.1
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 2.3e-278 963.0 1155 46.7
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 2.9e-252 876.3 774 57.6
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 3.3e-240 836.3 1345 39.0
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 2.1e-226 790.4 809 54.0
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 6.0e-226 788.9 1314 36.7
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 2.2e-220 770.4 863 49.4
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 2.3e-217 760.4 842 51.1
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 5.1e-217 759.2 1321 36.6
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 6.9e-214 748.8 847 50.9
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 5.3e-206 722.6 715 51.3
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 9.1e-198 695.3 815 46.7
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 3.1e-182 643.7 441 73.2
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 2.8e-170 604.0 798 43.1
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 6.4e-167 592.8 635 51.2
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 1.4e-161 575.1 460 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 5.4e-158 563.1 890 40.2
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 2.6e-128 464.5 1472 26.8
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 5.8e-120 436.8 451 51.2
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 2.5e-110 404.8 685 37.2
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 3.5e-109 401.0 399 51.9
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 6.9e-105 386.7 560 42.7
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 2.4e-81 308.5 353 46.7
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 3.7e-66 258.1 280 49.3
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 2.3e-52 212.2 226 49.6
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 1.4e-44 186.4 247 44.9
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 1.7e-42 179.5 1382 20.7
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 6.0e-40 171.0 184 50.5
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 3.3e-38 165.2 113 65.5
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 1.3e-34 153.3 168 54.2
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 6.0e-16 91.3 230 30.0
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 2.4e-12 79.3 209 25.8
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 1.4e-09 70.1 252 25.4


User provided reference genes

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