Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19673 Selenicereus undatus HOM05D000141 ORTHO05D004489 1.7e-103 379.4 199 100.0
Ah.03g149230 Amaranthus hybridus HOM05D000141 ORTHO05D004489 5.3e-89 331.3 197 87.3
EL10Ac6g14723 Beta vulgaris HOM05D000141 ORTHO05D004489 2.6e-88 328.9 197 87.8
AUR62003324 Chenopodium quinoa HOM05D000141 ORTHO05D004489 4.9e-87 324.7 197 85.8
AUR62016257 Chenopodium quinoa HOM05D000141 ORTHO05D004489 4.9e-87 324.7 197 85.8
Sc03g0004200 Simmondsia chinensis HOM05D000141 ORTHO05D004489 1.0e-79 300.4 197 80.2
RcHm_v2.0_Chr2g0096601 Rosa chinensis HOM05D000141 ORTHO05D004489 1.0e-71 273.9 202 72.8
Hma1.2p1_0085F.1_g044180 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 2.9e-71 272.3 188 77.1
Potri.011G146700 Populus trichocarpa HOM05D000141 ORTHO05D004489 3.8e-71 271.9 202 73.8
TWI31G1431 Tripterygium wilfordii HOM05D000141 ORTHO05D004489 1.1e-70 270.4 200 74.5
Dinv19108 Davidia involucrata HOM05D000141 ORTHO05D004489 1.9e-70 269.6 193 78.2
MD15G1226100 Malus domestica HOM05D000141 ORTHO05D004489 3.2e-70 268.9 201 71.6
FvH4_1g09831 Fragaria vesca HOM05D000141 ORTHO05D004489 5.5e-70 268.1 202 71.3
FAN23G0353 Fragaria x ananassa HOM05D000141 ORTHO05D004489 5.5e-70 268.1 202 71.3
FAN19G2837 Fragaria x ananassa HOM05D000141 ORTHO05D004489 7.2e-70 267.7 202 70.8
Sabra16G0308000 Salix brachista HOM05D000141 ORTHO05D004489 7.2e-70 267.7 202 73.3
CSS0021249 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 9.3e-70 267.3 193 77.7
FAN28G1293 Fragaria x ananassa HOM05D000141 ORTHO05D004489 9.3e-70 267.3 202 72.8
arahy.Tifrunner.gnm1.ann1.C6YA57 Arachis hypogaea HOM05D000141 ORTHO05D004489 1.6e-69 266.5 197 72.1
arahy.Tifrunner.gnm1.ann1.SMPN38 Arachis hypogaea HOM05D000141 ORTHO05D004489 1.6e-69 266.5 197 72.1
FAN23G1938 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.6e-69 266.5 202 70.8
FAN26G1899 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.6e-69 266.5 202 70.8
Nn6g31557 Nelumbo nucifera HOM05D000141 ORTHO05D004489 2.7e-69 265.8 201 72.1
Prupe.7G188900 Prunus persica HOM05D000141 ORTHO05D004489 2.7e-69 265.8 203 71.9
Manes.01G158800 Manihot esculenta HOM05D000141 ORTHO05D004489 3.6e-69 265.4 185 76.2
MSTRG.3653 Avicennia marina HOM05D000141 ORTHO05D004489 4.6e-69 265.0 199 73.4
CsaV3_3G000070 Cucumis sativus L. HOM05D000141 ORTHO05D004489 6.1e-69 264.6 197 73.1
ClCG10G000070 Citrullus lanatus HOM05D000141 ORTHO05D004489 7.9e-69 264.2 198 72.2
MD02G1106300 Malus domestica HOM05D000141 ORTHO05D004489 1.0e-68 263.8 206 70.4
Cpa.g.sc17.14 Carica papaya HOM05D000141 ORTHO05D004489 1.8e-68 263.1 202 72.3
MELO3C013702.2 Cucumis melo HOM05D000141 ORTHO05D004489 1.8e-68 263.1 197 73.1
Potri.001G455300 Populus trichocarpa HOM05D000141 ORTHO05D004489 1.8e-68 263.1 202 71.3
TAR381G1317 Trochodendron aralioides HOM05D000141 ORTHO05D004489 2.3e-68 262.7 201 72.6
GSVIVG01026414001 Vitis vinifera HOM05D000141 ORTHO05D004489 8.7e-68 260.8 201 72.6
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 1.1e-67 260.4 198 72.2
Haze_03652 Corylus avellana HOM05D000141 ORTHO05D004489 1.5e-67 260.0 202 71.3
Eucgr.I02176 Eucalyptus grandis HOM05D000141 ORTHO05D004489 4.3e-67 258.5 202 71.8
Lj4C246T10 Lonicera japonica HOM05D000141 ORTHO05D004489 4.3e-67 258.5 191 73.3
Oeu025038.1 Olea europaea HOM05D000141 ORTHO05D004489 5.7e-67 258.1 188 73.4
Duzib147G0825 Durio zibethinus HOM05D000141 ORTHO05D004489 7.4e-67 257.7 203 70.4
Lj2C507G14 Lonicera japonica HOM05D000141 ORTHO05D004489 9.7e-67 257.3 187 74.3
CiPaw.08G183100 Carya illinoinensis HOM05D000141 ORTHO05D004489 1.3e-66 256.9 203 69.5
ECA238G3829 Erigeron canadensis HOM05D000141 ORTHO05D004489 1.6e-66 256.5 200 70.0
SalBow5G4210 Salvia bowleyana HOM05D000141 ORTHO05D004489 1.6e-66 256.5 199 69.8
Ciclev10024719m.g Citrus clementina HOM05D000141 ORTHO05D004489 2.2e-66 256.1 202 70.3
Sed0006453 Sechium edule HOM05D000141 ORTHO05D004489 2.8e-66 255.8 197 71.6
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 3.7e-66 255.4 162 80.2
Migut.K01161 Erythranthe guttata HOM05D000141 ORTHO05D004489 3.7e-66 255.4 198 74.7
Oeu004295.1 Olea europaea HOM05D000141 ORTHO05D004489 3.7e-66 255.4 196 71.4
Lalb_Chr09g0324901 Lupinus albus HOM05D000141 ORTHO05D004489 8.2e-66 254.2 203 67.5
MBI04_g23902_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 2.4e-65 252.7 201 69.2
QL06p053568 Quercus lobata HOM05D000141 ORTHO05D004489 2.4e-65 252.7 153 83.7
Lsat_1_v5_gn_2_72800 Lactuca sativa HOM05D000141 ORTHO05D004489 3.1e-65 252.3 200 69.0
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 3.1e-65 252.3 198 69.2
VMungo1215G2882 Vigna mungo HOM05D000141 ORTHO05D004489 5.3e-65 251.5 203 69.0
SGA_v2.0_scaffold229G43289 Striga asiatica HOM05D000141 ORTHO05D004489 6.9e-65 251.1 187 72.2
Rhsim10G0188900 Rhododendron simsii HOM05D000141 ORTHO05D004489 9.1e-65 250.8 201 73.1
ATR0605G264 Amborella trichopoda HOM05D000141 ORTHO05D004489 1.5e-64 250.0 200 66.0
Glyma.09G194900 Glycine max HOM05D000141 ORTHO05D004489 1.5e-64 250.0 193 69.9
VMungo0251G0509 Vigna mungo HOM05D000141 ORTHO05D004489 2.0e-64 249.6 189 70.9
CAN.G883.8 Capsicum annuum HOM05D000141 ORTHO05D004489 3.4e-64 248.8 199 67.8
PGSC0003DMG400009428 Solanum tuberosum HOM05D000141 ORTHO05D004489 3.4e-64 248.8 199 67.3
Gorai.003G001000 Gossypium raimondii HOM05D000141 ORTHO05D004489 4.5e-64 248.4 202 69.8
Lj2g0025271 Lotus japonicus HOM05D000141 ORTHO05D004489 4.5e-64 248.4 201 68.7
Phvul.003G279200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 4.5e-64 248.4 190 70.0
Gohir.D03G000600 Gossypium hirsutum HOM05D000141 ORTHO05D004489 5.9e-64 248.1 202 69.8
HanXRQChr14g0443671 Helianthus annuus HOM05D000141 ORTHO05D004489 1.0e-63 247.3 187 70.6
Solyc02g068340.3 Solanum lycopersicum HOM05D000141 ORTHO05D004489 1.0e-63 247.3 199 67.3
MBI01_g31984_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 1.3e-63 246.9 203 67.0
Glyma.11G089400 Glycine max HOM05D000141 ORTHO05D004489 2.2e-63 246.1 203 66.0
Gohir.A02G179100 Gossypium hirsutum HOM05D000141 ORTHO05D004489 2.2e-63 246.1 203 70.0
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 2.2e-63 246.1 204 64.7
Sopen02g017470 Solanum pennellii HOM05D000141 ORTHO05D004489 2.9e-63 245.7 199 66.3
Medtr8g072430 Medicago truncatula HOM05D000141 ORTHO05D004489 3.8e-63 245.4 202 66.3
Nitab4.5_0017516g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 3.8e-63 245.4 199 66.8
DCAR_000973 Daucus carota HOM05D000141 ORTHO05D004489 6.5e-63 244.6 200 67.0
Peaxi162Scf00981g00112 Petunia axillaris HOM05D000141 ORTHO05D004489 1.1e-62 243.8 200 66.5
Ca_25026_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 1.4e-62 243.4 193 68.9
vmacro20418 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 1.4e-62 243.4 201 70.1
Glyma.01G155300 Glycine max HOM05D000141 ORTHO05D004489 1.9e-62 243.0 203 67.0
Nitab4.5_0028853g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 2.5e-62 242.7 199 65.3
Glyma.16G111200 Glycine max HOM05D000141 ORTHO05D004489 3.2e-62 242.3 189 68.8
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 9.4e-62 240.7 189 66.7
TPR.G14268 Trifolium pratense HOM05D000141 ORTHO05D004489 1.2e-61 240.4 197 66.5
Phvul.002G120200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 2.1e-61 239.6 202 66.3
Cc07_g12380 Coffea canephora HOM05D000141 ORTHO05D004489 1.4e-60 236.9 201 67.7
Thecc.01G000500 Theobroma cacao HOM05D000141 ORTHO05D004489 3.9e-60 235.3 142 81.7
CDE11G0155 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 8.8e-60 234.2 201 64.7
PSO170G4746 Papaver somniferum HOM05D000141 ORTHO05D004489 8.8e-60 234.2 200 64.0
Medtr5g025100 Medicago truncatula HOM05D000141 ORTHO05D004489 1.5e-59 233.4 203 66.5
PGR119G2404 Punica granatum HOM05D000141 ORTHO05D004489 1.5e-59 233.4 185 71.9
Zm00001eb067080 Zea mays HOM05D000141 ORTHO05D004489 1.5e-59 233.4 162 75.3
SEGI_37552 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 2.6e-59 232.6 164 70.1
Psat4g106800 Pisum sativum HOM05D000141 ORTHO05D004489 1.7e-58 229.9 203 64.0
CARHR053030 Cardamine hirsuta HOM05D000141 ORTHO05D004489 1.1e-57 227.3 190 66.3
TPR.G33741 Trifolium pratense HOM05D000141 ORTHO05D004489 1.4e-57 226.9 203 64.5
Sp2g30770 Schrenkiella parvula HOM05D000141 ORTHO05D004489 1.8e-57 226.5 191 66.0
Carub.0008s2860 Capsella rubella HOM05D000141 ORTHO05D004489 2.4e-57 226.1 190 66.3
AT5G65930 Arabidopsis thaliana HOM05D000141 ORTHO05D004489 5.3e-57 224.9 190 65.8
AL8G45710 Arabidopsis lyrata HOM05D000141 ORTHO05D004489 6.9e-57 224.6 190 65.8
Aa31LG1G14480 Aethionema arabicum HOM05D000522 ORTHO05D004489 9.1e-57 224.2 192 65.6
Thhalv10003527m.g Eutrema salsugineum HOM05D000141 ORTHO05D004489 9.1e-57 224.2 191 66.0
Psat2g146880 Pisum sativum HOM05D000141 ORTHO05D004489 9.1e-57 224.2 202 62.9
THA.LOC104824715 Tarenaya hassleriana HOM05D000141 ORTHO05D004489 5.5e-54 214.9 191 63.9
arahy.Tifrunner.gnm1.ann1.77JLPP Arachis hypogaea HOM05D000141 ORTHO05D004489 1.5e-51 206.8 180 63.9
arahy.Tifrunner.gnm1.ann1.L4A5BH Arachis hypogaea HOM05D000141 ORTHO05D004489 1.5e-51 206.8 180 63.9
BolC9t54106H Brassica oleracea HOM05D000141 ORTHO05D004489 1.5e-51 206.8 192 63.5
BcaC04g23100 Brassica carinata HOM05D000141 ORTHO05D004489 2.6e-51 206.1 192 63.5
BcaB04g20133 Brassica carinata HOM05D000141 ORTHO05D004489 1.3e-50 203.8 196 61.2
BolC2t12563H Brassica oleracea HOM05D000141 ORTHO05D004489 1.3e-50 203.8 169 66.9
C09p12180 Brassica napus HOM05D000141 ORTHO05D004489 2.2e-50 203.0 192 63.0
A09p10250 Brassica napus HOM05D000141 ORTHO05D004489 3.7e-50 202.2 197 61.4
BraA09t36670Z Brassica rapa HOM05D000141 ORTHO05D004489 4.8e-50 201.8 196 62.8
CANSAT25G2595 Cannabis sativa HOM05D000141 ORTHO05D004489 1.1e-49 200.7 117 80.3
Sabra11G0131600 Salix brachista HOM05D000141 ORTHO05D004489 1.8e-49 199.9 184 64.1
Os04g0666900 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004489 4.1e-49 198.7 124 80.6
Ca_22442_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 1.3e-47 193.7 198 57.1
Ca_22449_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 1.3e-47 193.7 198 57.1
SMO222G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 1.3e-47 193.7 207 52.2
COL.COLO4_22572 Corchorus olitorius HOM05D000141 ORTHO05D004489 1.7e-47 193.4 202 57.9
SMO118G0228 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 3.8e-47 192.2 207 51.7
AagrBONN_evm.TU.Sc2ySwM_228.4247 Anthoceros agrestis HOM05D000141 ORTHO05D004489 2.7e-45 186.0 229 47.2
Mapoly0012s0174 Marchantia polymorpha HOM05D000141 ORTHO05D004489 2.7e-45 186.0 194 51.5
BraA02t09381Z Brassica rapa HOM05D000141 ORTHO05D004489 8.8e-44 181.0 208 55.3
Rhsim08G0024500 Rhododendron simsii HOM05D000141 ORTHO05D004489 8.8e-44 181.0 137 68.6
Pp3c15_3730 Physcomitrium patens HOM05D000141 ORTHO05D004489 3.3e-43 179.1 175 54.3
Dinv28284 Davidia involucrata HOM05D000141 ORTHO05D004489 1.7e-42 176.8 201 56.7
Pp3c9_4530 Physcomitrium patens HOM05D000141 ORTHO05D004489 3.7e-42 175.6 175 51.4
HPP92_023789 Vanilla planifolia HOM05D000141 ORTHO05D004489 5.9e-40 168.3 143 59.4
CSS0002075 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 7.7e-40 167.9 192 56.8
Psat6g138520 Pisum sativum HOM05D000141 ORTHO05D004489 1.5e-35 153.7 194 47.9
Pp3c11_5890 Physcomitrium patens HOM05D000141 ORTHO05D004489 9.8e-35 151.0 183 45.9
Pp3c2_29920 Physcomitrium patens HOM05D000141 ORTHO05D004489 4.5e-32 142.1 159 48.4
CBR_g9092 Chara braunii HOM05D000141 ORTHO05D004489 3.8e-31 139.0 162 49.4
CBR_g8104 Chara braunii HOM05D000141 ORTHO05D004489 5.2e-28 128.6 132 50.8
SHI32495 Sapria himalayana HOM05D000141 ORTHO05D004489 2.0e-27 126.7 86 72.1
HPP92_022037 Vanilla planifolia HOM05D000141 ORTHO05D004489 3.4e-27 125.9 175 46.3
vmacro18483 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 5.6e-22 108.6 81 69.1
Psat2g033360 Pisum sativum HOM05D000141 ORTHO05D004489 4.7e-21 105.5 123 53.7
CsaV3_UNG147160 Cucumis sativus L. HOM05D000141 ORTHO05D004489 2.6e-19 99.8 54 88.9
Cre06.g278125 Chlamydomonas reinhardtii HOM05D000141 ORTHO05D004489 3.7e-18 95.9 131 44.3
CDE02G4588 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 2.4e-17 93.2 71 67.6
SHI32494 Sapria himalayana HOM05D000141 ORTHO05D004489 7.3e-14 81.6 74 56.8
PRCOL_00006273 Prasinoderma coloniale HOM05D000141 ORTHO05D004489 3.5e-08 62.8 129 34.9
MCO02G386 Micromonas commoda HOM05D000141 ORTHO05D004489 1.0e-07 61.2 142 31.7
unitig_748.g7256 Utricularia gibba HOM05D000141 ORTHO05D004489 1.7e-07 60.5 39 76.9


User provided reference genes

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