Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19659 Selenicereus undatus HOM05D007384 ORTHO05D008511 4.9e-79 297.7 151 100.0
Hund03542 Selenicereus undatus HOM05D007384 ORTHO05D008511 7.4e-27 124.4 163 46.6
EL10Ac6g14748 Beta vulgaris HOM05D007384 ORTHO05D008511 9.1e-25 117.5 162 45.7
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 9.1e-17 90.9 175 42.9
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 3.5e-16 89.0 166 41.0
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 1.0e-15 87.4 165 40.0
TAR628G0188 Trochodendron aralioides HOM05D007384 ORTHO05D008511 1.1e-14 84.0 170 34.7
TAR520G0001 Trochodendron aralioides HOM05D007384 ORTHO05D008511 1.9e-14 83.2 170 34.1
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 3.2e-14 82.4 160 38.8
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 5.5e-14 81.6 155 36.8
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 2.1e-13 79.7 163 34.4
Sc07g0001520 Simmondsia chinensis HOM05D007384 ORTHO05D008511 2.1e-13 79.7 146 39.7
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 4.7e-13 78.6 151 41.1
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 4.7e-13 78.6 154 36.4
SalBow5G0260 Salvia bowleyana HOM05D007384 ORTHO05D008511 8.0e-13 77.8 146 36.3
SalBow5G4202 Salvia bowleyana HOM05D007384 ORTHO05D008511 8.0e-13 77.8 154 35.1
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 1.4e-12 77.0 154 35.7
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 3.0e-12 75.9 147 41.5
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 8.8e-12 74.3 162 35.8
Cc07_g16090 Coffea canephora HOM05D007384 ORTHO05D008511 5.7e-11 71.6 161 33.5
Oeu056489.1 Olea europaea HOM05D007384 ORTHO05D008511 7.5e-11 71.2 154 33.8
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 9.7e-11 70.9 162 37.0
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 1.3e-10 70.5 158 36.7
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 2.8e-10 69.3 153 33.3
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 2.8e-10 69.3 153 33.3
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 2.8e-10 69.3 147 33.3
AUR62016274 Chenopodium quinoa HOM05D007384 ORTHO05D008511 6.3e-10 68.2 81 45.7
MSTRG.23314 Avicennia marina HOM05D007384 ORTHO05D008511 8.2e-10 67.8 158 31.6
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 8.2e-10 67.8 158 35.4
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 1.1e-09 67.4 160 35.6
Rhsim10G0013800 Rhododendron simsii HOM05D007384 ORTHO05D008511 3.1e-09 65.9 156 34.6
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 4.1e-09 65.5 164 32.9
SGA_v2.0_scaffold47G17711 Striga asiatica HOM05D007384 ORTHO05D008511 9.1e-09 64.3 154 34.4
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 9.1e-09 64.3 142 38.0
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 1.6e-08 63.5 155 33.5
unitig_736.g22624 Utricularia gibba HOM05D007384 ORTHO05D008511 1.6e-08 63.5 148 33.1
arahy.Tifrunner.gnm1.ann1.66AXK3 Arachis hypogaea HOM05D007384 ORTHO05D008511 2.7e-08 62.8 156 36.5
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 2.7e-08 62.8 164 33.5
Nn5g28918 Nelumbo nucifera HOM05D007384 ORTHO05D008511 2.7e-08 62.8 165 31.5
THA.LOC104799256 Tarenaya hassleriana HOM05D012887 ORTHO05D008511 2.7e-08 62.8 157 35.7
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 3.5e-08 62.4 156 34.0
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 5.9e-08 61.6 154 35.7
Ah.02g124370 Amaranthus hybridus HOM05D007384 ORTHO05D008511 7.7e-08 61.2 60 53.3
arahy.Tifrunner.gnm1.ann1.3HN607 Arachis hypogaea HOM05D007384 ORTHO05D008511 7.7e-08 61.2 156 35.9
arahy.Tifrunner.gnm1.ann1.P053PK Arachis hypogaea HOM05D007384 ORTHO05D008511 1.7e-07 60.1 157 35.7
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 2.9e-07 59.3 156 32.7
TPR.G40723 Trifolium pratense HOM05D007384 ORTHO05D008511 2.9e-07 59.3 144 33.3
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 3.8e-07 58.9 156 32.7
Gorai.011G111700 Gossypium raimondii HOM05D007384 ORTHO05D008511 6.5e-07 58.2 152 34.9
Oeu028378.1 Olea europaea HOM05D007384 ORTHO05D008511 6.5e-07 58.2 162 29.0
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 6.5e-07 58.2 173 32.4
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 8.5e-07 57.8 163 31.3
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 8.5e-07 57.8 152 32.9
Oeu028376.1 Olea europaea HOM05D007384 ORTHO05D008511 8.5e-07 57.8 168 30.4
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.1e-06 57.4 156 32.7
DCAR_001367 Daucus carota HOM05D007384 ORTHO05D008511 1.5e-06 57.0 141 33.3
CSS0019294 Camellia sinensis var. sinensis HOM05D007384 ORTHO05D008511 1.9e-06 56.6 74 47.3
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 1.9e-06 56.6 160 31.9
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 1.9e-06 56.6 150 32.7
Atru.chr4.403 Acer truncatum HOM05D007384 ORTHO05D008511 3.2e-06 55.8 156 33.3
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 4.2e-06 55.5 164 30.5
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 5.5e-06 55.1 164 30.5
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 5.5e-06 55.1 150 33.3
Prupe.6G173600 Prunus persica HOM05D007384 ORTHO05D008511 5.5e-06 55.1 166 30.1
Nitab4.5_0000471g0140 Nicotiana tabacum HOM05D007384 ORTHO05D008511 9.4e-06 54.3 162 27.8


User provided reference genes

Program Settings