Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.6e-181 638.6 341 100.0
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.6e-157 559.7 345 84.3
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.6e-141 506.5 344 78.5
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 3.5e-141 505.4 343 77.3
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.1e-139 500.4 343 77.0
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 5.6e-139 498.0 343 75.5
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 7.3e-139 497.7 343 75.5
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 9.5e-139 497.3 343 75.2
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 9.5e-139 497.3 343 77.0
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.2e-138 496.9 343 75.8
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.2e-138 496.9 343 75.8
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.6e-138 496.5 343 76.1
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 1.6e-138 496.5 343 75.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.1e-138 496.1 343 75.8
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 3.6e-138 495.4 343 74.3
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 4.7e-138 495.0 345 75.9
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 8.1e-138 494.2 343 75.2
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 8.1e-138 494.2 344 75.0
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 8.1e-138 494.2 343 74.3
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 1.1e-137 493.8 343 75.2
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 2.3e-137 492.7 343 76.1
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 8.9e-137 490.7 343 75.2
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 8.9e-137 490.7 343 74.6
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 8.9e-137 490.7 343 74.9
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.2e-136 490.3 343 73.8
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.2e-136 490.3 343 74.1
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.5e-136 490.0 343 73.8
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.5e-136 490.0 343 74.3
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 2.0e-136 489.6 343 73.5
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 2.0e-136 489.6 344 73.8
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 2.0e-136 489.6 344 74.4
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 2.0e-136 489.6 343 73.8
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.4e-136 488.8 343 73.8
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 3.4e-136 488.8 343 74.9
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 5.8e-136 488.0 343 74.1
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 7.5e-136 487.6 343 74.6
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 9.8e-136 487.3 343 74.1
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.3e-135 486.9 343 73.5
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.3e-135 486.9 344 73.5
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 2.2e-135 486.1 343 73.5
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.2e-135 486.1 343 73.2
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 2.9e-135 485.7 343 74.9
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 3.7e-135 485.3 343 72.9
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 3.7e-135 485.3 343 73.2
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 6.4e-135 484.6 343 74.3
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 6.4e-135 484.6 341 73.6
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 6.4e-135 484.6 343 73.5
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.1e-134 483.8 343 72.9
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.1e-134 483.8 343 72.9
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 1.1e-134 483.8 343 72.9
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.4e-134 483.4 343 73.5
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.4e-134 483.4 341 73.6
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 2.4e-134 482.6 343 72.9
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 3.2e-134 482.3 343 72.9
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 3.2e-134 482.3 343 72.6
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 3.2e-134 482.3 343 72.6
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 3.2e-134 482.3 343 72.6
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 4.1e-134 481.9 369 71.0
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 4.1e-134 481.9 346 74.3
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 7.1e-134 481.1 343 72.6
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 9.2e-134 480.7 343 72.6
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 2.7e-133 479.2 347 72.9
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 4.6e-133 478.4 345 73.3
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 7.8e-133 477.6 390 66.9
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 1.3e-132 476.9 338 73.4
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 1.7e-132 476.5 355 70.4
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 2.3e-132 476.1 343 72.3
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 3.9e-132 475.3 337 73.9
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 3.9e-132 475.3 345 73.3
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 5.1e-132 474.9 343 74.3
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 6.6e-132 474.6 345 72.5
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 2.5e-131 472.6 348 72.4
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 3.3e-131 472.2 343 71.7
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 3.3e-131 472.2 345 71.9
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.3e-131 471.9 343 71.4
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 7.3e-131 471.1 343 70.0
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.2e-130 470.3 343 71.1
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.6e-130 469.9 347 71.8
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 3.6e-130 468.8 355 69.9
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 3.6e-130 468.8 336 70.2
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.8e-129 466.5 349 71.3
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 7.6e-128 461.1 356 68.8
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 9.9e-128 460.7 342 69.3
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 1.3e-127 460.3 335 74.3
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 3.2e-126 455.7 325 72.9
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 9.2e-126 454.1 338 72.2
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 6.0e-125 451.4 343 67.9
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 8.6e-124 447.6 345 71.0
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 3.3e-123 445.7 268 84.3
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 4.3e-123 445.3 310 73.2
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.8e-122 442.6 336 68.5
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 4.7e-122 441.8 413 60.8
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.6e-120 436.0 311 74.9
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 9.9e-120 434.1 306 75.5
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.9e-118 429.9 341 68.6
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 4.2e-118 428.7 343 67.9
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 7.1e-118 427.9 268 80.2
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 1.3e-116 423.7 346 64.7
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.9e-115 419.9 334 67.4
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.6e-114 416.8 306 70.6
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.3e-111 407.1 343 64.7
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 4.9e-111 405.2 400 58.0
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 7.1e-110 401.4 293 73.7
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 1.4e-105 387.1 326 66.3
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 2.0e-104 383.3 294 70.4
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 9.9e-104 380.9 343 61.8
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.4e-102 376.3 343 60.9
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 7.1e-102 374.8 416 53.6
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 2.3e-100 369.8 222 82.4
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 1.9e-99 366.7 222 80.6
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 1.5e-91 340.5 386 51.6
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.5e-91 339.7 343 57.7
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.0e-87 327.8 204 80.4
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 5.0e-87 325.5 424 48.1
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 5.5e-86 322.0 247 71.7
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 5.5e-86 322.0 246 69.9
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 7.4e-75 285.0 328 49.4
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 4.1e-73 279.3 169 82.8
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 4.1e-73 279.3 343 49.0
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 9.4e-70 268.1 247 56.7
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.8e-68 263.8 255 60.8
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 3.7e-66 256.1 200 67.0
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 4.2e-62 242.7 303 43.6
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 5.5e-54 215.7 144 71.5
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 3.0e-52 209.9 144 76.4
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 8.8e-52 208.4 234 53.0
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 1.6e-48 197.6 194 55.7
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.9e-47 193.4 131 78.6
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.6e-45 187.6 163 65.0
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 4.9e-42 176.0 333 35.1
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 9.2e-41 171.8 104 85.6
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.3e-39 167.9 326 34.0
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.5e-38 164.5 182 55.5
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 7.3e-38 162.2 334 32.0
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 2.6e-35 153.7 313 34.5
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.0e-31 141.7 130 62.3
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 2.3e-28 130.6 113 62.8
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 3.7e-26 123.2 74 83.8
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 7.5e-19 99.0 73 64.4
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 5.4e-17 92.8 89 64.0
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 2.7e-16 90.5 104 54.8
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.8e-13 80.5 93 51.6
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 5.6e-06 56.2 38 73.7


User provided reference genes

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