Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 2.4e-146 522.3 291 100.0
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.5e-95 352.8 202 84.2
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 4.2e-95 352.1 202 83.7
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 2.0e-92 343.2 242 69.8
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 8.3e-83 311.2 214 73.4
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 1.3e-80 303.9 230 66.5
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 6.5e-80 301.6 231 65.4
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 1.1e-79 300.8 228 65.8
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 2.5e-79 299.7 203 71.4
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 7.2e-79 298.1 213 70.4
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 7.2e-79 298.1 213 70.4
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 9.4e-79 297.7 235 64.3
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 2.7e-78 296.2 235 63.4
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 2.7e-78 296.2 220 69.5
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.7e-78 296.2 212 68.4
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 2.7e-78 296.2 203 70.4
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 2.7e-78 296.2 236 60.6
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 4.7e-78 295.4 202 71.3
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 4.7e-78 295.4 200 72.5
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 4.7e-78 295.4 234 61.5
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 5.2e-77 292.0 231 63.6
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 5.2e-77 292.0 231 63.6
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 6.8e-77 291.6 219 67.6
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 8.8e-77 291.2 198 70.7
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 8.8e-77 291.2 201 69.2
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 8.8e-77 291.2 224 63.4
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 1.2e-76 290.8 229 63.3
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 1.5e-76 290.4 228 62.7
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.5e-76 290.4 225 64.9
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 3.4e-76 289.3 227 62.6
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 5.7e-76 288.5 216 65.7
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 7.5e-76 288.1 227 63.9
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 7.5e-76 288.1 201 68.7
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 1.3e-75 287.3 205 67.3
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.2e-75 286.6 204 69.6
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 2.8e-75 286.2 227 62.1
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 2.8e-75 286.2 202 68.3
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 4.8e-75 285.4 228 60.1
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 6.3e-75 285.0 225 63.6
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 8.3e-75 284.6 202 68.8
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 1.8e-74 283.5 228 62.7
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 1.8e-74 283.5 225 62.7
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 5.4e-74 282.0 203 66.0
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 9.1e-74 281.2 228 61.8
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 9.1e-74 281.2 225 62.7
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 1.6e-73 280.4 225 62.7
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.0e-73 280.0 201 68.2
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 2.7e-73 279.6 228 63.6
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 4.5e-73 278.9 203 66.0
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 1.7e-72 276.9 228 57.9
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.7e-72 276.9 224 63.4
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.3e-72 276.6 224 62.9
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 2.9e-72 276.2 215 63.7
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 8.6e-72 274.6 166 76.5
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 8.6e-72 274.6 224 62.9
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 8.6e-72 274.6 224 62.9
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 8.6e-72 274.6 226 62.4
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 1.1e-71 274.2 209 63.2
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 1.5e-71 273.9 227 61.2
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.9e-71 273.5 249 58.2
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 2.5e-71 273.1 200 67.5
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 2.1e-70 270.0 199 65.8
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.8e-69 266.9 202 66.3
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 5.7e-68 261.9 200 62.5
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 2.2e-67 260.0 203 62.1
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 2.8e-67 259.6 203 62.1
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 6.3e-67 258.5 203 61.6
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 6.3e-67 258.5 215 59.5
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 8.3e-67 258.1 203 61.6
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 8.3e-67 258.1 206 59.7
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.1e-66 257.7 203 61.1
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 1.4e-66 257.3 215 59.1
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 1.4e-66 257.3 215 59.1
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 1.4e-66 257.3 215 59.1
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.4e-66 257.3 201 63.7
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 1.8e-66 256.9 206 60.2
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 2.4e-66 256.5 215 59.1
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 2.4e-66 256.5 232 57.3
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 3.2e-66 256.1 201 64.2
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 3.2e-66 256.1 235 57.9
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 3.2e-66 256.1 200 63.5
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 4.1e-66 255.8 206 59.7
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 5.4e-66 255.4 203 59.6
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 5.4e-66 255.4 229 58.5
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 7.0e-66 255.0 226 60.2
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 7.0e-66 255.0 203 59.6
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 9.2e-66 254.6 203 59.1
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 9.2e-66 254.6 203 59.6
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 1.2e-65 254.2 206 59.2
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.0e-65 253.4 229 58.1
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 7.3e-63 245.0 228 53.9
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 6.8e-61 238.4 172 68.6
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 6.8e-61 238.4 185 63.2
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 6.8e-53 211.8 170 60.0
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 1.5e-52 210.7 199 54.8
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 1.5e-52 210.7 199 54.8
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 5.8e-52 208.8 167 62.3
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 7.5e-52 208.4 167 62.3
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 7.5e-52 208.4 235 49.8
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 2.4e-50 203.4 231 51.9
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 3.3e-47 193.0 179 57.0
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 1.4e-45 187.6 133 66.9
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 2.3e-45 186.8 210 46.7
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 2.9e-43 179.9 136 64.7
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 1.4e-42 177.6 139 61.2
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 7.3e-39 165.2 144 56.9
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 2.1e-38 163.7 121 64.5
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 7.1e-34 148.7 104 67.3
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 1.7e-32 144.1 100 68.0
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 2.8e-30 136.7 100 64.0
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 2.4e-29 133.7 223 34.5
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 2.2e-27 127.1 89 69.7
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 9.3e-26 121.7 104 57.7
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 4.9e-19 99.4 97 54.6
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 4.9e-19 99.4 97 54.6
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 4.9e-19 99.4 97 54.6
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 4.9e-19 99.4 97 54.6
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 4.9e-19 99.4 97 54.6
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 1.9e-18 97.4 141 41.8
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 7.1e-18 95.5 71 62.0
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 1.2e-12 78.2 51 68.6
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 1.5e-12 77.8 51 68.6
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 1.5e-12 77.8 51 68.6
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 2.6e-12 77.0 55 63.6
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 2.6e-12 77.0 52 67.3
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 4.5e-12 76.3 51 66.7
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.9e-10 70.9 78 52.6
HanXRQChr05g0139891 Helianthus annuus HOM05D001733 ORTHO05D001882 5.7e-07 59.3 64 50.0
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 2.1e-06 57.4 72 41.7
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 8.2e-06 55.5 48 50.0


User provided reference genes

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