Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19161 Selenicereus undatus HOM05D000545 ORTHO05D000539 2.7e-91 338.6 162 100.0
Hund24727 Selenicereus undatus HOM05D000545 ORTHO05D000539 5.0e-21 105.1 208 37.5
Ah.04g151830 Amaranthus hybridus HOM05D000545 ORTHO05D000539 1.0e-13 80.9 194 37.1
AUR62024413 Chenopodium quinoa HOM05D000545 ORTHO05D000539 1.4e-10 70.5 141 36.9
DCAR_013444 Daucus carota HOM05D000545 ORTHO05D004272 1.8e-07 60.1 36 75.0
Prupe.2G014500 Prunus persica HOM05D000545 ORTHO05D000539 3.1e-07 59.3 129 34.9
Gohir.D06G073800 Gossypium hirsutum HOM05D000545 ORTHO05D000539 4.1e-07 58.9 152 34.2
Os12g0618600 Oryza sativa ssp. japonica HOM05D000545 ORTHO05D004272 4.1e-07 58.9 34 76.5
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 7.0e-07 58.2 36 72.2
Aqoxy2G00195 Aquilegia oxysepala HOM05D000545 ORTHO05D000539 9.2e-07 57.8 40 65.0
Sed0001584 Sechium edule HOM05D000545 ORTHO05D000539 9.2e-07 57.8 36 72.2
EL10Ac2g04334 Beta vulgaris HOM05D000545 ORTHO05D000539 1.6e-06 57.0 36 72.2
EL10Ac3g07033 Beta vulgaris HOM05D000545 ORTHO05D000539 1.6e-06 57.0 47 61.7
CANSAT80G1101 Cannabis sativa HOM05D000545 ORTHO05D000539 1.6e-06 57.0 36 72.2
Dinv18067 Davidia involucrata HOM05D000545 ORTHO05D000539 1.6e-06 57.0 40 75.0
Lj3g0016238 Lotus japonicus HOM05D000545 ORTHO05D000539 1.6e-06 57.0 115 37.4
Phvul.010G133300 Phaseolus vulgaris HOM05D000545 ORTHO05D000539 1.6e-06 57.0 121 34.7
Psat4g183600 Pisum sativum HOM05D000545 ORTHO05D000539 1.6e-06 57.0 114 37.7
Actinidia09348 Actinidia chinensis HOM05D000545 ORTHO05D000539 2.0e-06 56.6 35 80.0
CiPaw.10G031800 Carya illinoinensis HOM05D000545 ORTHO05D000539 2.0e-06 56.6 40 65.0
Ciclev10032207m.g Citrus clementina HOM05D000545 ORTHO05D000539 2.0e-06 56.6 36 72.2
Eucgr.A02381 Eucalyptus grandis HOM05D000545 ORTHO05D000539 2.0e-06 56.6 40 65.0
RcHm_v2.0_Chr3g0476401 Rosa chinensis HOM05D000545 ORTHO05D004272 2.0e-06 56.6 40 65.0
BcaB04g19243 Brassica carinata HOM05D000545 ORTHO05D004272 2.7e-06 56.2 37 64.9
ClCG09G004120 Citrullus lanatus HOM05D000545 ORTHO05D000539 2.7e-06 56.2 30 83.3
MELO3C009551.2 Cucumis melo HOM05D000545 ORTHO05D004272 2.7e-06 56.2 37 67.6
MELO3C023554.2 Cucumis melo HOM05D000545 ORTHO05D000539 2.7e-06 56.2 30 83.3
CsaV3_3G038100 Cucumis sativus L. HOM05D000545 ORTHO05D004272 2.7e-06 56.2 37 67.6
CsaV3_7G031020 Cucumis sativus L. HOM05D000545 ORTHO05D000539 2.7e-06 56.2 30 83.3
Nn7g36222 Nelumbo nucifera HOM05D000545 ORTHO05D000539 2.7e-06 56.2 33 78.8
CAN.G219.6 Capsicum annuum HOM05D000545 ORTHO05D000539 3.5e-06 55.8 34 76.5
Gohir.A01G134000 Gossypium hirsutum HOM05D000545 ORTHO05D000539 3.5e-06 55.8 41 63.4
Gohir.D01G121300 Gossypium hirsutum HOM05D000545 ORTHO05D000539 3.5e-06 55.8 41 63.4
Gorai.002G151800 Gossypium raimondii HOM05D000545 ORTHO05D000539 3.5e-06 55.8 41 63.4
PGSC0003DMG400006863 Solanum tuberosum HOM05D000545 ORTHO05D000539 3.5e-06 55.8 34 76.5
THA.LOC104826680 Tarenaya hassleriana HOM05D000545 ORTHO05D000539 3.5e-06 55.8 41 63.4
C03p92040 Brassica napus HOM05D000545 ORTHO05D000539 4.5e-06 55.5 34 73.5
CDE06G0388 Ceratophyllum demersum HOM05D000545 ORTHO05D000539 4.5e-06 55.5 36 75.0
ClCG10G018210 Citrullus lanatus HOM05D000545 ORTHO05D004272 4.5e-06 55.5 37 67.6
Ciclev10005144m.g Citrus clementina HOM05D000545 ORTHO05D000539 4.5e-06 55.5 44 63.6
MD15G1213400 Malus domestica HOM05D000545 ORTHO05D000539 4.5e-06 55.5 36 69.4
Potri.006G201900 Populus trichocarpa HOM05D000545 ORTHO05D004272 4.5e-06 55.5 31 77.4
RcHm_v2.0_Chr1g0316121 Rosa chinensis HOM05D000545 ORTHO05D000539 4.5e-06 55.5 36 69.4
RcHm_v2.0_Chr1g0316201 Rosa chinensis HOM05D000545 ORTHO05D000539 4.5e-06 55.5 36 69.4
Sabra06G0155300 Salix brachista HOM05D000545 ORTHO05D004272 4.5e-06 55.5 31 77.4
Thecc.06G117600 Theobroma cacao HOM05D000545 ORTHO05D000539 4.5e-06 55.5 98 38.8
TAR369G0405 Trochodendron aralioides HOM05D000545 ORTHO05D004272 4.5e-06 55.5 36 69.4
AT3G05690 Arabidopsis thaliana HOM05D000545 ORTHO05D004272 5.9e-06 55.1 37 70.3
AT3G14020 Arabidopsis thaliana HOM05D000545 ORTHO05D000539 5.9e-06 55.1 37 64.9
A08p01170 Brassica napus HOM05D000545 ORTHO05D000539 5.9e-06 55.1 34 73.5
BraA08t32168Z Brassica rapa HOM05D000545 ORTHO05D000539 5.9e-06 55.1 34 73.5
CiPaw.02G137100 Carya illinoinensis HOM05D000545 ORTHO05D000539 5.9e-06 55.1 102 37.3
FAN10G3954 Fragaria x ananassa HOM05D000545 ORTHO05D000539 5.9e-06 55.1 40 65.0
Gohir.A08G144100 Gossypium hirsutum HOM05D000545 ORTHO05D000539 5.9e-06 55.1 39 71.8
Gohir.D08G165100 Gossypium hirsutum HOM05D000545 ORTHO05D000539 5.9e-06 55.1 39 71.8
Gorai.004G172100 Gossypium raimondii HOM05D000545 ORTHO05D000539 5.9e-06 55.1 39 71.8
Nn6g34632 Nelumbo nucifera HOM05D000545 ORTHO05D004272 5.9e-06 55.1 41 63.4
Os03g0696300 Oryza sativa ssp. japonica HOM05D000545 ORTHO05D000539 5.9e-06 55.1 32 75.0
Potri.016G068200 Populus trichocarpa HOM05D000545 ORTHO05D004272 5.9e-06 55.1 34 70.6
Rhsim07G0056100 Rhododendron simsii HOM05D000545 ORTHO05D000539 5.9e-06 55.1 36 69.4
Sp1g40610 Schrenkiella parvula HOM05D000545 ORTHO05D000539 5.9e-06 55.1 158 30.4
Zm00001eb050320 Zea mays HOM05D000545 ORTHO05D004272 5.9e-06 55.1 40 65.0
arahy.Tifrunner.gnm1.ann1.TY3GKM Arachis hypogaea HOM05D000545 ORTHO05D000539 7.7e-06 54.7 40 70.0
A03p34270 Brassica napus HOM05D000545 ORTHO05D004272 7.7e-06 54.7 48 56.2
C03p41720 Brassica napus HOM05D000545 ORTHO05D004272 7.7e-06 54.7 48 56.2
BolC3t16452H Brassica oleracea HOM05D000545 ORTHO05D004272 7.7e-06 54.7 48 56.2
CARHR088830 Cardamine hirsuta HOM05D000545 ORTHO05D000539 7.7e-06 54.7 37 64.9
Cfa016844 Carpinus fangiana HOM05D000545 ORTHO05D000539 7.7e-06 54.7 44 59.1
CDE11G0745 Ceratophyllum demersum HOM05D000545 ORTHO05D000539 7.7e-06 54.7 42 66.7
Thhalv10011685m.g Eutrema salsugineum HOM05D000545 ORTHO05D000539 7.7e-06 54.7 161 28.0
Thhalv10021244m.g Eutrema salsugineum HOM05D000545 ORTHO05D004272 7.7e-06 54.7 40 67.5
Thhalv10021250m.g Eutrema salsugineum HOM05D000545 ORTHO05D000539 7.7e-06 54.7 38 63.2
FvH4_6g20510 Fragaria vesca HOM05D000545 ORTHO05D004272 7.7e-06 54.7 40 62.5
FAN02G2962 Fragaria x ananassa HOM05D000545 ORTHO05D004272 7.7e-06 54.7 40 62.5
FAN05G1196 Fragaria x ananassa HOM05D000545 ORTHO05D004272 7.7e-06 54.7 40 62.5
FAN05G4911 Fragaria x ananassa HOM05D000545 ORTHO05D004272 7.7e-06 54.7 40 62.5
FAN09G4692 Fragaria x ananassa HOM05D000545 ORTHO05D004272 7.7e-06 54.7 40 62.5
FAN14G5643 Fragaria x ananassa HOM05D000545 ORTHO05D004272 7.7e-06 54.7 40 62.5
Glyma.02G195000 Glycine max HOM05D000545 ORTHO05D004272 7.7e-06 54.7 35 68.6
Lsat_1_v5_gn_4_31560 Lactuca sativa HOM05D000545 ORTHO05D000539 7.7e-06 54.7 36 72.2
Lj5g0007773 Lotus japonicus HOM05D000545 ORTHO05D004272 7.7e-06 54.7 32 71.9
MBI02_g20546_MAGBIO Magnolia biondii HOM05D000545 ORTHO05D000539 7.7e-06 54.7 39 69.2
Nn2g14352 Nelumbo nucifera HOM05D000545 ORTHO05D004272 7.7e-06 54.7 40 65.0
Nn2g15356 Nelumbo nucifera HOM05D000545 ORTHO05D000539 7.7e-06 54.7 33 75.8
Nitab4.5_0007165g0020 Nicotiana tabacum HOM05D000545 ORTHO05D000539 7.7e-06 54.7 34 73.5
Os03g0174900 Oryza sativa ssp. japonica HOM05D000545 ORTHO05D000539 7.7e-06 54.7 37 67.6
Peaxi162Scf00953g00217 Petunia axillaris HOM05D000545 ORTHO05D000539 7.7e-06 54.7 35 71.4
SalBow6G6188 Salvia bowleyana HOM05D000545 ORTHO05D000539 7.7e-06 54.7 38 71.1
Sp3g12270 Schrenkiella parvula HOM05D000545 ORTHO05D000539 7.7e-06 54.7 37 64.9
Solyc01g087240.3 Solanum lycopersicum HOM05D000545 ORTHO05D000539 7.7e-06 54.7 34 73.5
Sopen01g034290 Solanum pennellii HOM05D000545 ORTHO05D000539 7.7e-06 54.7 34 73.5
vmacro17049 Vaccinium macrocarpon HOM05D000545 ORTHO05D000539 7.7e-06 54.7 38 63.2
HPP92_013941 Vanilla planifolia HOM05D000545 ORTHO05D004272 7.7e-06 54.7 36 69.4
Zm00001eb005690 Zea mays HOM05D000545 ORTHO05D000539 7.7e-06 54.7 129 30.2


User provided reference genes

Program Settings