Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 4.0e-131 471.5 246 100.0
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.9e-105 385.6 246 80.5
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.2e-103 380.2 246 80.9
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 1.3e-97 360.1 293 67.6
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.0e-94 350.5 294 65.0
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.5e-93 346.7 293 63.1
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 2.8e-92 342.4 294 63.9
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.6e-90 336.7 294 62.9
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.6e-90 335.9 294 62.6
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 4.5e-90 335.1 294 61.9
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 4.5e-90 335.1 294 62.9
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 6.5e-89 331.3 294 61.2
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 8.5e-89 330.9 294 62.6
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.1e-88 330.5 294 61.6
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.1e-88 330.5 294 61.9
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.1e-88 330.5 294 62.2
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.9e-88 329.7 294 61.9
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 4.2e-88 328.6 294 61.9
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 7.2e-88 327.8 294 61.2
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 7.2e-88 327.8 296 61.1
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 7.2e-88 327.8 294 61.2
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 7.2e-88 327.8 294 60.9
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.7e-87 325.9 294 60.2
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 4.7e-87 325.1 295 60.0
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 4.7e-87 325.1 295 60.0
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 4.7e-87 325.1 294 59.9
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 4.7e-87 325.1 295 61.0
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 6.1e-87 324.7 294 61.9
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 8.0e-87 324.3 295 60.3
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 8.0e-87 324.3 295 60.3
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 8.0e-87 324.3 295 62.0
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.8e-86 323.2 294 61.9
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.8e-86 323.2 295 61.4
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.0e-86 322.4 294 60.5
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.0e-86 322.4 294 59.9
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 4.0e-86 322.0 294 60.5
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 5.2e-86 321.6 294 61.6
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.1e-85 320.5 294 60.2
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.1e-85 320.5 293 61.4
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 2.6e-85 319.3 295 59.7
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 3.3e-85 318.9 294 60.5
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 4.4e-85 318.5 294 59.5
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 4.4e-85 318.5 297 60.3
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.3e-84 317.0 294 59.5
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.3e-84 317.0 291 59.5
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.3e-84 317.0 320 56.2
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.7e-84 316.6 294 60.5
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.7e-84 316.6 293 61.4
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 3.7e-84 315.5 294 59.2
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 4.8e-84 315.1 294 59.2
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 4.8e-84 315.1 291 59.1
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.1e-83 313.9 294 58.8
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.8e-83 313.2 294 59.2
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.4e-83 312.8 295 60.0
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 2.4e-83 312.8 328 56.1
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 3.1e-83 312.4 294 58.8
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 5.3e-83 311.6 295 59.0
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 9.1e-83 310.8 307 59.0
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 9.1e-83 310.8 307 59.0
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.6e-82 310.1 294 59.2
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 1.6e-82 310.1 306 58.2
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 2.7e-82 309.3 292 60.3
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.7e-82 309.3 297 59.3
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 3.8e-81 305.4 324 54.9
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 6.5e-81 304.7 294 56.5
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 6.5e-81 304.7 297 58.9
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.1e-80 303.9 294 58.5
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.5e-80 303.5 248 68.5
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.5e-80 303.5 297 56.2
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.2e-80 302.4 293 59.0
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 5.5e-80 301.6 328 54.0
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 9.4e-80 300.8 295 58.0
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 9.4e-80 300.8 294 54.4
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.2e-79 300.4 293 58.0
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.6e-79 300.1 297 58.2
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 4.7e-79 298.5 295 58.6
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 6.1e-79 298.1 294 58.2
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.8e-78 296.6 294 53.7
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 3.0e-78 295.8 294 53.4
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 5.2e-78 295.0 305 56.4
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 6.8e-78 294.7 295 55.9
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.2e-77 293.9 297 56.2
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 1.5e-77 293.5 298 57.7
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.5e-77 293.5 296 57.8
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 2.6e-77 292.7 291 56.7
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 5.7e-77 291.6 294 56.8
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.7e-76 290.0 294 56.8
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.8e-76 289.3 321 52.6
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 2.8e-76 289.3 295 55.6
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 3.7e-76 288.9 215 70.7
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 2.4e-75 286.2 294 55.8
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 3.1e-75 285.8 296 54.7
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 4.1e-75 285.4 317 52.1
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 5.4e-75 285.0 352 47.7
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.0e-74 283.1 294 55.8
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 2.7e-74 282.7 293 54.6
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.7e-74 282.7 294 55.8
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.3e-73 280.4 295 56.3
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 2.2e-73 279.6 285 58.2
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 6.5e-73 278.1 289 56.7
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.5e-72 276.9 290 56.2
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 2.5e-72 276.2 294 54.8
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 7.2e-72 274.6 339 50.4
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.0e-70 270.8 212 68.9
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.8e-70 270.0 310 51.6
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.0e-70 269.2 293 53.6
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 4.0e-70 268.9 268 56.7
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 2.6e-69 266.2 297 51.5
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 1.3e-68 263.8 215 65.1
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.3e-68 263.8 296 50.0
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.7e-68 263.5 205 65.9
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.7e-68 263.5 253 57.3
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.2e-68 263.1 289 54.7
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 3.7e-68 262.3 271 55.4
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 3.1e-67 259.2 244 59.4
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 4.1e-67 258.8 281 53.4
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 7.0e-67 258.1 294 51.4
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 7.7e-66 254.6 295 50.8
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.3e-65 253.8 218 62.8
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 6.6e-65 251.5 295 50.8
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 6.6e-65 251.5 291 51.5
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 4.7e-63 245.4 295 50.8
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.4e-62 243.8 210 65.7
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 1.7e-60 236.9 277 50.9
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.1e-59 234.2 238 55.5
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 3.2e-59 232.6 242 57.9
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 9.2e-59 231.1 238 53.8
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.6e-58 230.3 238 52.9
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.7e-58 229.6 238 51.3
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 2.1e-55 219.9 307 45.3
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.0e-54 217.6 314 46.8
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 2.3e-54 216.5 196 60.2
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 8.9e-54 214.5 314 45.9
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.5e-53 213.8 294 44.6
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 2.2e-52 209.9 197 58.4
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.1e-51 205.7 230 50.9
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 1.0e-49 201.1 223 52.9
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 5.4e-43 178.7 125 71.2
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 6.2e-39 165.2 369 35.8
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 8.1e-39 164.9 240 44.6
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 3.1e-38 162.9 317 36.9
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 4.9e-36 155.6 168 54.8
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.8e-30 137.1 136 59.6
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 9.9e-29 131.3 333 32.7
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 2.2e-28 130.2 83 69.9
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 1.6e-23 114.0 81 74.1
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 8.1e-23 111.7 334 29.3
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 3.4e-21 106.3 100 62.0
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.7e-18 96.7 95 58.9
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 1.3e-17 94.4 56 80.4
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 3.9e-17 92.8 201 32.3
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 3.3e-16 89.7 188 37.2
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.4e-14 84.3 273 32.2
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 3.5e-10 69.7 42 76.2
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.8e-09 67.4 42 71.4
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 6.7e-09 65.5 42 69.0
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 9.6e-08 61.6 46 58.7
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.7e-07 59.7 42 59.5
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 8.1e-07 58.5 197 32.0
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 2.4e-06 57.0 100 40.0


User provided reference genes

Program Settings