Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.6e-92 342.8 179 100.0
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.3e-33 147.1 77 89.6
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.3e-33 147.1 77 89.6
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.4e-32 142.9 77 87.0
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.7e-30 136.7 77 83.1
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.5e-29 132.9 77 79.2
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 4.7e-28 128.6 77 76.6
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 4.7e-28 128.6 77 76.6
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.7e-28 128.6 77 76.6
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 6.1e-28 128.3 77 76.6
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.4e-27 127.1 77 79.2
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 3.0e-27 125.9 77 76.6
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 3.0e-27 125.9 77 75.3
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.0e-27 125.9 77 74.0
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 3.9e-27 125.6 72 79.2
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 5.2e-27 125.2 77 76.6
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 5.2e-27 125.2 77 76.6
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 8.8e-27 124.4 72 75.0
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.1e-26 124.0 77 75.3
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.1e-26 124.0 77 76.6
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.5e-26 123.6 77 76.6
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 2.0e-26 123.2 71 76.1
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 2.0e-26 123.2 71 76.1
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.6e-26 122.9 76 71.1
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.6e-26 122.9 77 75.3
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.6e-26 122.9 77 72.7
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 3.3e-26 122.5 70 78.6
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 3.3e-26 122.5 77 71.4
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.4e-26 122.1 77 74.0
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 9.7e-26 120.9 77 72.7
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 9.7e-26 120.9 77 72.7
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 9.7e-26 120.9 77 72.7
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 9.7e-26 120.9 77 72.7
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 9.7e-26 120.9 77 72.7
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 9.7e-26 120.9 77 72.7
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 9.7e-26 120.9 72 77.8
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.3e-25 120.6 76 69.7
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.3e-25 120.6 76 69.7
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.3e-25 120.6 71 76.1
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.3e-25 120.6 71 77.5
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-25 120.2 74 71.6
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-25 120.2 74 71.6
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-25 120.2 74 71.6
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.7e-25 120.2 74 71.6
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.7e-25 120.2 77 71.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.7e-25 120.2 75 73.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.7e-25 120.2 70 81.4
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 2.2e-25 119.8 74 70.3
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.8e-25 119.4 77 72.7
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.8e-25 119.4 77 71.4
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 3.7e-25 119.0 72 73.6
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.7e-25 119.0 86 67.4
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 4.8e-25 118.6 74 71.6
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 4.8e-25 118.6 72 75.0
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.8e-25 118.6 77 72.7
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.8e-25 118.6 77 72.7
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 4.8e-25 118.6 77 72.7
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 4.8e-25 118.6 70 74.3
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.3e-25 118.2 77 74.0
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 6.3e-25 118.2 77 70.1
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 6.3e-25 118.2 77 67.5
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 6.3e-25 118.2 80 73.8
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 8.2e-25 117.9 77 71.4
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 8.2e-25 117.9 77 71.4
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 8.2e-25 117.9 77 71.4
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 8.2e-25 117.9 71 76.1
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 8.2e-25 117.9 80 73.8
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 8.2e-25 117.9 77 70.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.1e-24 117.5 72 75.0
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.1e-24 117.5 77 72.7
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.4e-24 117.1 78 67.9
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.4e-24 117.1 74 71.6
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-24 116.7 77 71.4
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.8e-24 116.7 77 71.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.8e-24 116.7 77 67.5
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.4e-24 116.3 76 67.1
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.4e-24 116.3 74 70.3
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.4e-24 116.3 77 68.8
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.1e-24 115.9 77 72.7
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 4.1e-24 115.5 77 68.8
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 4.1e-24 115.5 72 72.2
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 5.3e-24 115.2 72 75.0
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 5.3e-24 115.2 74 73.0
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 7.0e-24 114.8 72 70.8
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 7.0e-24 114.8 72 70.8
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 9.1e-24 114.4 72 70.8
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.2e-23 114.0 72 73.6
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.2e-23 114.0 72 73.6
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.2e-23 114.0 71 76.1
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.2e-23 114.0 72 70.8
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.2e-23 114.0 72 70.8
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.6e-23 113.6 77 71.4
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.0e-23 113.2 77 66.2
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 3.5e-23 112.5 95 56.8
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.5e-23 112.1 73 74.0
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 4.5e-23 112.1 77 67.5
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 5.9e-23 111.7 77 70.1
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 7.7e-23 111.3 72 69.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.7e-23 111.3 72 69.4
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.7e-23 111.3 72 69.4
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.7e-23 111.3 72 69.4
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.0e-22 110.9 65 75.4
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.0e-22 110.9 72 69.4
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 1.0e-22 110.9 72 69.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.3e-22 110.5 72 69.4
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.3e-22 110.5 75 68.0
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.7e-22 110.2 72 68.1
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.2e-22 109.8 70 72.9
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.8e-22 109.0 66 75.8
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.5e-22 108.2 92 59.8
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 8.5e-22 107.8 69 72.5
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.1e-21 107.5 63 79.4
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.1e-21 107.5 81 65.4
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.5e-21 107.1 64 75.0
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.9e-21 106.7 63 76.2
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 3.2e-21 105.9 72 66.7
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 4.2e-21 105.5 66 74.2
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 4.2e-21 105.5 102 53.9
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 7.2e-21 104.8 63 76.2
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 9.4e-21 104.4 66 71.2
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.6e-20 103.6 77 64.9
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.0e-19 100.9 77 63.6
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 4.0e-19 99.0 65 69.2
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.2e-19 98.6 77 61.0
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 5.2e-19 98.6 93 54.8
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 9.8e-18 94.4 65 64.6
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.8e-17 92.8 77 55.8
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.8e-17 92.8 66 57.6
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 4.8e-17 92.0 63 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.4e-16 90.5 64 62.5
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.4e-16 90.5 73 53.4
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.2e-15 87.4 77 50.6
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.0e-14 84.3 74 48.6
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 2.9e-14 82.8 74 48.6
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 3.6e-12 75.9 43 74.4
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 5.2e-11 72.0 72 50.0
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.8e-11 71.2 49 59.2
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.4e-08 63.9 39 79.5
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.1e-08 62.8 77 46.8


User provided reference genes

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