Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 1.0e-232 809.7 398 100.0
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 2.3e-75 287.0 422 46.4
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.5e-66 257.7 429 42.4
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.3e-65 254.6 423 40.4
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 8.1e-65 251.9 398 42.5
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 2.4e-64 250.4 400 43.0
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 2.0e-63 247.3 400 42.0
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 1.7e-62 244.2 388 42.5
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 1.2e-60 238.0 400 41.5
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 1.6e-60 237.7 399 41.1
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.1e-60 237.3 402 42.3
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 2.7e-60 236.9 399 42.6
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 3.5e-60 236.5 294 46.9
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 6.0e-60 235.7 320 45.6
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 7.9e-60 235.3 400 40.8
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 7.9e-60 235.3 320 45.6
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.0e-59 235.0 294 48.0
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 1.0e-59 235.0 398 40.7
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.0e-59 235.0 320 45.3
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 1.8e-59 234.2 278 50.0
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 3.0e-59 233.4 278 49.6
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 3.0e-59 233.4 399 41.1
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 3.0e-59 233.4 398 39.9
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.9e-58 230.7 285 48.8
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 1.9e-58 230.7 275 50.5
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.9e-58 230.7 279 49.8
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 2.5e-58 230.3 283 47.7
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 2.5e-58 230.3 283 47.7
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 2.5e-58 230.3 278 50.0
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 3.3e-58 229.9 281 49.5
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 3.3e-58 229.9 403 40.2
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 3.3e-58 229.9 283 48.4
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 7.4e-58 228.8 279 48.4
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 9.6e-58 228.4 417 39.1
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 9.6e-58 228.4 285 48.1
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 1.6e-57 227.6 276 49.6
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.6e-57 227.6 275 48.7
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 1.6e-57 227.6 278 48.2
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 2.1e-57 227.3 398 39.7
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.8e-57 226.9 398 40.2
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 4.8e-57 226.1 281 48.8
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 4.8e-57 226.1 280 49.3
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 4.8e-57 226.1 280 46.4
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 8.1e-57 225.3 285 47.0
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 8.1e-57 225.3 278 48.6
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 8.1e-57 225.3 275 48.7
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.8e-56 224.2 283 46.6
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.8e-56 224.2 283 46.6
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 1.8e-56 224.2 284 47.5
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 3.1e-56 223.4 285 47.7
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 4.0e-56 223.0 399 38.3
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 5.3e-56 222.6 275 48.4
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 6.9e-56 222.2 281 47.7
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 6.9e-56 222.2 371 41.0
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 9.0e-56 221.9 281 46.6
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 9.0e-56 221.9 279 47.3
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 1.2e-55 221.5 329 45.3
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 2.0e-55 220.7 277 49.1
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 3.4e-55 219.9 283 47.7
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 3.4e-55 219.9 397 38.8
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 3.4e-55 219.9 278 46.4
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 4.5e-55 219.5 399 37.1
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 5.8e-55 219.2 396 38.9
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 7.6e-55 218.8 281 46.6
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 7.6e-55 218.8 401 39.9
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 1.0e-54 218.4 398 37.7
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 1.7e-54 217.6 279 47.3
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 2.9e-54 216.9 399 38.8
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 2.9e-54 216.9 281 45.6
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 4.9e-54 216.1 398 38.4
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.1e-53 214.9 335 43.9
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 1.4e-53 214.5 301 44.5
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 2.5e-53 213.8 445 37.5
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 4.2e-53 213.0 407 36.6
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 9.3e-53 211.8 281 47.0
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 9.3e-53 211.8 357 42.9
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 1.2e-52 211.5 266 48.5
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.6e-52 211.1 266 49.6
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.3e-51 208.0 140 71.4
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 2.3e-51 207.2 141 73.0
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 3.0e-51 206.8 140 72.1
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 5.1e-51 206.1 402 38.8
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 1.5e-50 204.5 278 45.7
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 2.5e-50 203.8 141 69.5
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 4.3e-50 203.0 400 37.5
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 2.8e-49 200.3 415 36.9
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 3.7e-49 199.9 309 41.4
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 3.7e-49 199.9 140 70.0
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 1.1e-48 198.4 445 34.6
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 1.2e-47 194.9 377 37.4
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 2.0e-47 194.1 267 44.9
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 2.6e-47 193.7 168 61.9
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 1.0e-46 191.8 262 44.3
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.7e-46 191.0 147 65.3
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 8.7e-43 178.7 113 77.9
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 8.7e-43 178.7 146 65.8
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 4.3e-42 176.4 278 40.3
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 2.2e-41 174.1 396 34.3
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 2.8e-41 173.7 295 39.0
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 5.3e-40 169.5 298 38.6
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 1.6e-36 157.9 98 76.5
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 2.3e-35 154.1 406 33.7
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.1e-34 151.8 286 39.9
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 3.1e-32 143.7 288 34.4
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 1.4e-29 134.8 88 73.9
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 1.0e-27 128.6 81 72.8
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 1.7e-25 121.3 103 59.2
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 4.2e-21 106.7 200 37.5
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 4.4e-18 96.7 263 30.8
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 4.8e-09 66.6 52 65.4
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 7.0e-08 62.8 33 87.9
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 1.2e-07 62.0 35 80.0
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 2.0e-07 61.2 127 33.9
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-07 61.2 34 82.4
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 2.7e-07 60.8 35 77.1
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 4.5e-07 60.1 41 70.7
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 2.2e-06 57.8 29 89.7


User provided reference genes

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