Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 0.0e+00 1242.6 611 100.0
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 9.2e-193 677.6 637 59.8
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 3.2e-177 625.9 639 56.5
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 8.1e-173 611.3 627 55.3
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 1.1e-166 590.9 651 51.9
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 1.5e-166 590.5 662 50.8
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 4.3e-166 589.0 660 51.7
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.8e-165 586.3 638 52.8
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 1.1e-164 584.3 651 51.5
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 2.6e-163 579.7 643 50.5
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 7.6e-163 578.2 651 50.7
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 2.9e-162 576.2 645 50.7
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 6.4e-162 575.1 639 51.6
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 3.2e-161 572.8 648 52.0
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 3.5e-160 569.3 655 50.7
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 7.9e-160 568.2 649 50.7
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 2.3e-159 566.6 596 55.5
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 3.9e-159 565.8 644 51.1
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 5.1e-159 565.5 647 51.2
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 1.6e-157 560.5 648 48.9
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 2.8e-157 559.7 644 49.7
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 1.4e-156 557.4 671 48.3
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 3.1e-156 556.2 652 49.7
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 4.0e-156 555.8 650 49.8
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 5.3e-156 555.4 645 49.3
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 5.3e-156 555.4 647 49.5
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 6.9e-156 555.1 638 50.9
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.5e-155 553.9 644 49.7
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 5.8e-155 552.0 646 49.8
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 1.3e-154 550.8 646 48.3
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 2.9e-154 549.7 647 50.2
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.9e-154 549.7 647 50.2
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 6.4e-154 548.5 654 49.7
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.9e-153 547.0 620 50.2
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.9e-153 547.0 620 50.2
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 1.9e-153 547.0 661 49.2
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 5.5e-153 545.4 647 50.1
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 1.2e-152 544.3 652 48.2
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.1e-152 543.5 647 49.6
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 1.0e-151 541.2 647 48.8
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 1.3e-151 540.8 671 48.7
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 1.8e-151 540.4 654 48.8
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 2.3e-151 540.0 642 49.7
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 1.9e-150 537.0 648 47.4
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 1.9e-150 537.0 649 47.1
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 2.5e-150 536.6 651 47.8
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 4.3e-150 535.8 653 47.8
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 5.6e-150 535.4 637 48.2
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 5.6e-150 535.4 640 48.3
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 7.4e-150 535.0 655 48.4
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 2.1e-149 533.5 675 45.6
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 2.1e-149 533.5 637 47.9
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 2.8e-149 533.1 649 47.3
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 4.8e-149 532.3 649 47.5
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 8.2e-149 531.6 652 48.0
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 1.4e-148 530.8 651 47.0
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.4e-148 530.8 679 47.0
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.4e-148 530.0 606 51.5
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 6.9e-148 528.5 652 47.5
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 2.6e-147 526.6 661 46.7
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 2.6e-147 526.6 651 46.7
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 3.4e-147 526.2 638 49.1
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 3.4e-147 526.2 642 48.3
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 4.5e-147 525.8 661 46.6
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 4.5e-147 525.8 649 47.6
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 1.7e-146 523.9 642 48.8
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 2.9e-146 523.1 639 48.0
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 3.8e-146 522.7 639 49.1
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 6.5e-146 521.9 650 47.5
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 1.9e-145 520.4 639 48.2
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 2.5e-145 520.0 650 47.8
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 4.2e-145 519.2 654 47.1
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 4.2e-145 519.2 578 53.8
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 5.5e-145 518.8 642 49.1
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 1.2e-144 517.7 643 47.9
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 1.6e-144 517.3 636 47.8
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 2.1e-144 516.9 543 51.6
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 6.0e-144 515.4 642 48.4
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 7.9e-144 515.0 586 50.3
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.3e-143 514.2 676 45.0
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 1.3e-143 514.2 641 48.2
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 2.3e-143 513.5 652 46.5
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 3.0e-143 513.1 637 49.0
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 3.0e-143 513.1 637 49.0
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 8.7e-143 511.5 653 46.7
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 1.1e-142 511.1 679 45.5
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 1.1e-142 511.1 646 45.2
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 3.3e-142 509.6 666 46.4
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 5.7e-142 508.8 507 54.8
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.3e-141 507.7 661 46.4
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 2.8e-141 506.5 659 46.4
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 1.1e-140 504.6 641 47.4
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 2.0e-139 500.4 636 47.3
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 7.2e-137 491.9 547 51.7
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 1.5e-134 484.2 723 42.9
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 2.2e-130 470.3 648 43.5
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.8e-124 450.7 642 43.9
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 7.7e-123 445.3 643 43.7
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 1.4e-121 441.0 638 42.3
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 4.2e-121 439.5 632 41.8
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 7.2e-121 438.7 635 41.9
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 3.6e-120 436.4 410 60.0
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 6.1e-120 435.6 565 46.5
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 3.2e-113 413.3 582 43.1
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.2e-113 412.9 654 41.9
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 7.7e-107 392.1 656 41.5
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 5.5e-105 386.0 558 43.9
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 1.4e-103 381.3 410 53.4
SEGI_06649 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 2.3e-103 380.6 534 43.3
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 6.3e-101 372.5 449 49.0
CARHR272340 Cardamine hirsuta HOM05D002034 ORTHO05D004251 1.0e-98 365.2 460 45.7
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 4.1e-92 343.2 442 45.2
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.8e-88 330.5 457 43.1
Oeu023980.1 Olea europaea HOM05D002034 ORTHO05D004251 9.8e-86 322.0 412 45.9
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 2.4e-84 317.4 710 32.5
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 3.1e-79 300.4 634 34.5
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 7.5e-78 295.8 634 33.0
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 2.1e-75 287.7 692 32.1
HPP92_012001 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.9e-69 267.3 334 45.8
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 8.1e-64 249.2 224 57.6
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 8.9e-63 245.7 514 33.5
Pp3c20_20284 Physcomitrium patens HOM05D002034 ORTHO05D004251 8.9e-63 245.7 514 33.5
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 5.4e-60 236.5 295 48.1
CBR_g32390 Chara braunii HOM05D002034 ORTHO05D004251 3.3e-57 227.3 547 30.3
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 1.5e-49 201.8 222 50.9
CSS0020954 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.1e-47 195.7 173 59.5
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 3.1e-47 194.1 926 25.4
Lj1A128G36 Lonicera japonica HOM05D002034 ORTHO05D004251 5.3e-47 193.4 299 41.5
Lalb_Chr15g0083121 Lupinus albus HOM05D002034 ORTHO05D004251 4.8e-40 170.2 129 65.9
C03p14280 Brassica napus HOM05D002034 ORTHO05D004251 6.5e-37 159.8 133 63.2
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.3e-34 152.1 561 27.6
VMungo0647G1991 Vigna mungo HOM05D002034 ORTHO05D004251 2.9e-29 134.4 117 56.4
Lsat_1_v5_gn_6_89500 Lactuca sativa HOM05D002034 ORTHO05D004251 2.5e-25 121.3 179 41.3
Pp3c17_9080 Physcomitrium patens HOM05D002034 ORTHO05D004251 5.7e-25 120.2 431 25.8
SEGI_39431 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 7.9e-19 99.8 101 51.5
arahy.Tifrunner.gnm1.ann1.A2LLI3 Arachis hypogaea HOM05D000315 ORTHO05D004251 1.1e-15 89.4 116 48.3
BcaB01g04519 Brassica carinata HOM05D002034 ORTHO05D004251 7.7e-14 83.2 52 71.2
VMungo0647G0969 Vigna mungo HOM05D002034 ORTHO05D004251 1.7e-13 82.0 122 38.5
arahy.Tifrunner.gnm1.ann1.I9ZGDX Arachis hypogaea HOM05D000315 ORTHO05D000527 2.2e-13 81.6 129 44.2
Lj1C128T10 Lonicera japonica HOM05D002034 ORTHO05D004251 2.7e-11 74.7 54 66.7
CSS0014057 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.6e-11 74.3 54 70.4
CSS0042911 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.6e-11 74.3 54 70.4
CSS0015957 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 7.9e-11 73.2 54 68.5
Cpa.g.sc2.385 Carica papaya HOM05D002034 ORTHO05D004251 7.9e-11 73.2 73 53.4
Potri.001G280832 Populus trichocarpa HOM05D002034 ORTHO05D004251 1.4e-10 72.4 57 63.2
CSS0002014 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.3e-10 71.6 54 66.7
FAN21G1045 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.1e-09 69.3 50 70.0
CSS0025945 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.5e-09 68.9 54 66.7
CSS0038912 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.0e-09 68.6 54 64.8
Lalb_Chr17g0348531 Lupinus albus HOM05D001434 ORTHO05D004586 2.0e-09 68.6 295 25.8
SGA_v2.0_scaffold63G21659 Striga asiatica HOM05D002034 ORTHO05D004251 7.4e-09 66.6 38 73.7
EL10Ac8g18947 Beta vulgaris HOM05D000269 ORTHO05D005780 3.7e-08 64.3 52 59.6
MCO07G130 Micromonas commoda HOM05D002034 ORTHO05D004251 1.1e-07 62.8 92 38.0
MD03G1198400 Malus domestica HOM05D001434 ORTHO05D004586 1.8e-07 62.0 324 23.5
MBI02_g25402_MAGBIO Magnolia biondii HOM05D001434 ORTHO05D004586 3.1e-07 61.2 87 35.6
MD11G1214500 Malus domestica HOM05D001434 ORTHO05D004586 3.1e-07 61.2 194 27.3
SEGI_18638 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 3.1e-07 61.2 87 41.4
AagrBONN_evm.TU.Sc2ySwM_368.1890 Anthoceros agrestis HOM05D002034 ORTHO05D004251 5.3e-07 60.5 88 37.5
SEGI_15036 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 5.3e-07 60.5 120 34.2
arahy.Tifrunner.gnm1.ann1.S6TU68 Arachis hypogaea HOM05D002034 ORTHO05D004251 7.0e-07 60.1 61 49.2
CANSAT11G2014 Cannabis sativa HOM05D001434 ORTHO05D004586 9.1e-07 59.7 202 26.7
Ca_06331_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 9.1e-07 59.7 292 25.3
Ca_30702_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 9.1e-07 59.7 292 25.3
GSVIVG01037676001 Vitis vinifera HOM05D001434 ORTHO05D004586 9.1e-07 59.7 156 28.2
Ca_14751_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 1.5e-06 58.9 296 26.0
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-06 58.9 85 38.8
ATR0794G053 Amborella trichopoda HOM05D001434 ORTHO05D004586 2.6e-06 58.2 87 33.3
Gorai.009G440800 Gossypium raimondii HOM05D001434 ORTHO05D004586 2.6e-06 58.2 170 27.6
Pp3c24_7080 Physcomitrium patens HOM05D001434 ORTHO05D004586 2.6e-06 58.2 353 23.2
Ah.04g166010 Amaranthus hybridus HOM05D001434 ORTHO05D004586 3.5e-06 57.8 292 24.3
Pp3c23_10600 Physcomitrium patens HOM05D001434 ORTHO05D004586 3.5e-06 57.8 331 22.7
Gohir.D05G372500 Gossypium hirsutum HOM05D001434 ORTHO05D004586 4.5e-06 57.4 170 27.6
Manes.03G131600 Manihot esculenta HOM05D001434 ORTHO05D004586 5.9e-06 57.0 196 26.0
VMungo0647G2168 Vigna mungo HOM05D001434 ORTHO05D004586 5.9e-06 57.0 163 27.6
C03p14290 Brassica napus HOM05D002034 ORTHO05D004251 7.7e-06 56.6 116 36.2


User provided reference genes

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