Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 2.1e-88 328.9 157 100.0
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.2e-80 303.1 157 89.8
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.1e-80 302.4 157 89.2
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 4.3e-78 294.7 157 87.3
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.6e-72 276.2 163 78.5
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 7.9e-72 273.9 162 79.6
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.3e-71 273.1 163 79.1
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 3.0e-71 271.9 163 77.9
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 3.9e-71 271.6 163 78.5
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 3.9e-71 271.6 163 77.9
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 5.1e-71 271.2 163 78.5
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 6.7e-71 270.8 163 78.5
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 8.7e-71 270.4 163 77.3
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.1e-70 270.0 157 80.9
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.1e-70 270.0 163 76.7
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.5e-70 269.6 163 77.9
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.9e-70 269.2 163 77.9
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 3.3e-70 268.5 163 77.9
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 3.3e-70 268.5 158 79.7
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 3.3e-70 268.5 159 78.0
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 5.6e-70 267.7 162 77.8
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 9.6e-70 266.9 162 77.8
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 9.6e-70 266.9 163 77.3
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.6e-69 266.2 140 87.1
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.6e-69 266.2 163 75.5
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.6e-69 266.2 163 75.5
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 4.8e-69 264.6 163 76.1
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 4.8e-69 264.6 163 76.1
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 8.2e-69 263.8 163 76.7
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.1e-68 263.5 163 76.7
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.8e-68 262.7 163 76.1
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 6.9e-68 260.8 138 87.0
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 6.9e-68 260.8 141 83.7
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.2e-67 260.0 163 75.5
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.5e-67 259.6 138 86.2
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 1.5e-67 259.6 163 75.5
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.6e-67 258.8 163 75.5
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 3.4e-67 258.5 139 85.6
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 4.5e-67 258.1 163 74.8
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.7e-66 256.1 160 76.2
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.9e-66 255.4 160 75.6
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.9e-66 255.4 160 75.6
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 2.9e-66 255.4 163 74.2
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 3.8e-66 255.0 139 82.7
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 4.9e-66 254.6 160 75.6
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 4.9e-66 254.6 160 77.5
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 6.5e-66 254.2 163 73.6
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 6.5e-66 254.2 159 76.1
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 6.5e-66 254.2 163 73.0
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.1e-65 253.4 157 75.2
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 1.4e-65 253.1 163 74.2
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.4e-65 253.1 163 73.6
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.9e-65 252.7 163 71.8
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.5e-65 252.3 154 76.6
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.5e-65 252.3 163 75.5
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 2.5e-65 252.3 163 74.2
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 3.2e-65 251.9 156 74.4
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.2e-65 251.9 139 82.7
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.2e-65 251.9 139 82.7
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 4.2e-65 251.5 139 82.0
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 4.2e-65 251.5 139 81.3
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 5.5e-65 251.1 160 75.0
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.2e-64 250.0 160 74.4
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.6e-64 249.6 160 73.8
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 2.1e-64 249.2 163 72.4
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 2.7e-64 248.8 139 80.6
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 2.7e-64 248.8 160 73.8
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.7e-64 248.8 163 70.6
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 2.7e-64 248.8 160 73.8
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 4.6e-64 248.1 159 71.1
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.6e-64 248.1 163 70.6
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 6.0e-64 247.7 163 69.9
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 6.0e-64 247.7 163 69.9
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 6.0e-64 247.7 163 70.6
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 7.9e-64 247.3 163 69.9
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.0e-63 246.9 139 80.6
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.8e-63 246.1 139 81.3
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 3.0e-63 245.4 160 73.8
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 3.9e-63 245.0 163 69.9
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 3.9e-63 245.0 163 69.9
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 5.1e-63 244.6 163 69.9
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 5.1e-63 244.6 163 69.3
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 5.1e-63 244.6 163 68.7
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.9e-62 242.7 163 69.3
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 2.5e-62 242.3 148 75.7
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.4e-62 240.7 139 78.4
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 7.4e-62 240.7 139 80.6
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.3e-61 240.0 139 77.7
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.6e-61 239.6 160 70.6
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.7e-61 238.4 124 88.7
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 3.7e-61 238.4 139 77.0
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 3.7e-61 238.4 139 77.0
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.4e-60 236.5 139 77.0
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 3.1e-60 235.3 139 75.5
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 4.1e-60 235.0 139 76.3
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.1e-60 235.0 134 79.1
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.9e-60 234.2 134 78.4
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 9.0e-60 233.8 163 69.3
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 5.9e-59 231.1 163 67.5
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 5.9e-59 231.1 139 74.8
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 5.9e-59 231.1 139 74.8
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 2.9e-58 228.8 157 68.8
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 7.2e-57 224.2 139 75.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 7.2e-57 224.2 139 73.4
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 9.3e-57 223.8 163 65.6
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 4.6e-56 221.5 164 65.2
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 4.6e-56 221.5 136 72.8
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.3e-55 219.9 139 71.9
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.3e-55 219.9 178 60.7
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.1e-54 216.9 160 63.1
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 7.4e-54 214.2 134 71.6
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.3e-53 213.4 159 63.5
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 2.2e-53 212.6 160 67.5
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 6.3e-53 211.1 157 63.7
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.0e-50 201.4 109 86.2
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.4e-47 193.4 163 59.5
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 1.7e-45 186.4 163 55.8
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 8.2e-45 184.1 163 55.8
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.2e-43 180.3 123 70.7
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 7.7e-43 177.6 129 66.7
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 7.9e-40 167.5 123 63.4
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 2.3e-39 166.0 163 56.4
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 4.8e-37 158.3 103 69.9
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.3e-36 154.8 140 55.7
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 3.5e-35 152.1 123 59.3
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 4.2e-33 145.2 164 48.2
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.6e-32 143.3 164 47.0
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 2.7e-32 142.5 83 78.3
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 6.1e-32 141.4 176 48.3
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 6.1e-32 141.4 163 48.5
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 1.0e-31 140.6 176 48.3
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.4e-31 140.2 90 73.3
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.2e-29 132.9 164 46.3
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 2.4e-28 129.4 165 43.0
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.2e-24 117.1 67 83.6
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 3.0e-23 112.5 64 76.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 6.3e-21 104.8 140 40.7
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 4.4e-14 82.0 57 66.7
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.1e-12 77.4 53 66.0
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 4.5e-11 72.0 116 36.2
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.7e-10 70.1 62 58.1
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.9e-10 69.3 58 58.6
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.1e-09 67.4 49 59.2
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 6.1e-08 61.6 43 67.4
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 5.2e-07 58.5 46 54.3


User provided reference genes

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