Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 2.4e-117 425.6 232 100.0
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.1e-66 257.3 200 67.5
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.4e-64 250.4 221 60.6
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.5e-63 246.9 200 65.5
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 1.1e-48 197.6 198 56.6
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 3.1e-48 196.1 200 54.5
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 4.0e-48 195.7 210 55.7
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 9.0e-48 194.5 186 57.0
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 6.4e-46 188.3 197 53.8
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 8.4e-46 188.0 213 54.9
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.9e-45 186.8 204 54.4
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 1.9e-45 186.8 214 54.2
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 1.9e-45 186.8 220 50.9
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 3.2e-45 186.0 190 53.7
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 3.2e-45 186.0 190 53.7
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 3.2e-45 186.0 203 55.2
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 5.4e-45 185.3 204 55.4
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 5.4e-45 185.3 197 52.8
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 4.6e-44 182.2 202 52.0
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 3.9e-43 179.1 188 52.7
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 8.7e-43 177.9 211 48.8
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 1.1e-42 177.6 131 65.6
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.9e-42 176.8 196 54.1
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 3.3e-42 176.0 204 52.9
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 4.3e-42 175.6 190 53.7
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 4.8e-41 172.2 197 52.3
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 6.2e-41 171.8 207 51.2
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 6.2e-41 171.8 204 47.1
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.1e-40 171.0 199 47.7
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 1.4e-40 170.6 190 50.0
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 3.1e-40 169.5 201 48.3
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 6.9e-40 168.3 190 50.5
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 6.9e-40 168.3 190 50.5
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 9.0e-40 167.9 206 50.0
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 1.2e-39 167.5 189 47.6
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 1.5e-39 167.2 184 50.5
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 1.5e-39 167.2 198 50.5
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 1.5e-39 167.2 203 48.3
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 2.6e-39 166.4 169 52.7
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 2.6e-39 166.4 197 49.2
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 4.5e-39 165.6 185 48.6
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 5.8e-39 165.2 213 47.9
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 7.6e-39 164.9 201 49.3
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 1.3e-38 164.1 182 48.9
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 1.7e-38 163.7 170 50.6
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 1.7e-38 163.7 192 49.5
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 2.9e-38 162.9 187 49.7
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 4.9e-38 162.2 192 46.9
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 6.4e-38 161.8 119 65.5
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.4e-37 160.6 204 47.5
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 3.2e-37 159.5 197 50.3
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 4.2e-37 159.1 204 47.1
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 4.2e-37 159.1 185 44.9
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 7.1e-37 158.3 214 43.5
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 9.3e-37 157.9 187 48.7
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 2.7e-36 156.4 119 61.3
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 2.7e-36 156.4 113 61.9
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 3.5e-36 156.0 127 60.6
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 4.6e-36 155.6 193 47.2
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 1.8e-35 153.7 205 44.4
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.9e-35 152.5 210 45.7
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 3.9e-35 152.5 205 43.9
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 3.9e-35 152.5 205 44.4
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 3.9e-35 152.5 181 45.3
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.1e-34 151.0 186 47.8
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.5e-34 150.6 179 46.4
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 2.5e-34 149.8 182 45.6
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 2.5e-34 149.8 182 45.6
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 5.6e-34 148.7 119 58.8
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.3e-33 147.5 235 41.7
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 4.8e-33 145.6 206 43.7
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 6.2e-33 145.2 113 61.9
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.4e-32 144.1 107 64.5
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 2.4e-32 143.3 111 59.5
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 3.1e-32 142.9 125 54.4
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 3.1e-32 142.9 133 51.1
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 4.0e-32 142.5 111 58.6
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 4.0e-32 142.5 111 58.6
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 4.0e-32 142.5 112 58.0
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 6.9e-32 141.7 111 58.6
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 6.9e-32 141.7 111 58.6
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 9.0e-32 141.4 111 58.6
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 9.0e-32 141.4 119 55.5
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 9.0e-32 141.4 145 49.7
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 1.5e-31 140.6 185 47.0
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 2.0e-31 140.2 111 58.6
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 4.5e-31 139.0 111 56.8
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 7.6e-31 138.3 109 56.9
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.3e-30 137.5 118 55.1
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 2.9e-30 136.3 209 45.0
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 4.9e-30 135.6 167 46.1
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 8.4e-30 134.8 190 46.3
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 1.4e-29 134.0 98 62.2
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 2.1e-28 130.2 99 58.6
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 1.0e-27 127.9 151 46.4
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.8e-24 117.1 176 43.2
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 5.3e-24 115.5 113 52.2
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 5.3e-24 115.5 204 39.7
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 2.9e-22 109.8 204 39.7
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.1e-21 107.8 197 36.5
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.7e-20 103.2 123 44.7
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.7e-20 103.2 123 44.7
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 4.6e-20 102.4 275 30.9
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 4.6e-20 102.4 191 38.2
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 2.8e-17 93.2 66 63.6
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.0e-14 84.7 113 42.5
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.9e-13 80.5 129 37.2
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 3.9e-11 72.8 115 37.4
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 3.9e-11 72.8 107 37.4
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 1.5e-10 70.9 74 50.0
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 1.7e-09 67.4 113 33.6
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 6.3e-09 65.5 132 36.4
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 6.3e-09 65.5 131 35.9
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 8.2e-09 65.1 129 32.6
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 1.1e-08 64.7 124 34.7
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 1.4e-08 64.3 137 33.6
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 1.4e-08 64.3 121 36.4
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 2.4e-08 63.5 97 41.2
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 3.1e-08 63.2 124 33.1
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 5.3e-08 62.4 131 35.1
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 5.3e-08 62.4 84 39.3
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 7.0e-08 62.0 156 29.5
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 9.1e-08 61.6 131 33.6
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 9.1e-08 61.6 97 40.2
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 9.1e-08 61.6 97 40.2
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 9.1e-08 61.6 118 33.9
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 9.1e-08 61.6 116 34.5
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 9.1e-08 61.6 166 28.9
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 1.2e-07 61.2 128 31.2
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 1.5e-07 60.8 97 39.2
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 1.5e-07 60.8 97 39.2
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 1.5e-07 60.8 97 39.2
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 2.0e-07 60.5 89 34.8
Duzib147G1525 Durio zibethinus HOM05D002878 ORTHO05D003649 2.0e-07 60.5 82 40.2
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 2.0e-07 60.5 110 36.4
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 2.6e-07 60.1 128 31.2
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 2.6e-07 60.1 101 37.6
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 2.6e-07 60.1 147 28.6
vmacro05340 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 3.4e-07 59.7 92 37.0
Haze_15396 Corylus avellana HOM05D002878 ORTHO05D003649 4.5e-07 59.3 102 38.2
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 5.9e-07 58.9 131 33.6
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 5.9e-07 58.9 83 36.1
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 5.9e-07 58.9 124 31.5
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 5.9e-07 58.9 124 31.5
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 7.7e-07 58.5 119 33.6
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 7.7e-07 58.5 128 32.0
TAR376G0016 Trochodendron aralioides HOM05D002878 ORTHO05D003649 7.7e-07 58.5 124 31.5
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 1.0e-06 58.2 97 36.1
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 1.0e-06 58.2 129 31.0
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 1.0e-06 58.2 115 34.8
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 1.0e-06 58.2 124 31.5
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 1.3e-06 57.8 127 30.7
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 1.3e-06 57.8 119 37.0
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 1.3e-06 57.8 97 34.0
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 1.3e-06 57.8 130 30.8
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 1.7e-06 57.4 119 33.6
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 1.7e-06 57.4 97 37.1
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 1.7e-06 57.4 97 37.1
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 1.7e-06 57.4 85 36.5
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 1.7e-06 57.4 130 33.1
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 1.7e-06 57.4 99 32.3
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 1.7e-06 57.4 88 42.0
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 2.2e-06 57.0 97 35.1
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 2.2e-06 57.0 116 31.0
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 2.2e-06 57.0 116 29.3
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 2.2e-06 57.0 128 33.6
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 2.9e-06 56.6 80 40.0
Eucgr.I00923 Eucalyptus grandis HOM05D002878 ORTHO05D003649 2.9e-06 56.6 90 36.7
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 2.9e-06 56.6 76 38.2
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 2.9e-06 56.6 125 33.6
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 3.8e-06 56.2 97 34.0
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 5.0e-06 55.8 97 35.1
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 5.0e-06 55.8 158 29.7
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 5.0e-06 55.8 76 38.2
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 5.0e-06 55.8 121 31.4
Dinv39846 Davidia involucrata HOM05D002878 ORTHO05D003649 6.5e-06 55.5 129 30.2
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 6.5e-06 55.5 78 37.2
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 6.5e-06 55.5 125 32.8
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 8.5e-06 55.1 131 32.8


User provided reference genes

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