Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 3.3e-150 535.0 271 100.0
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.0e-79 300.8 178 83.1
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.8e-79 300.1 176 84.7
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.5e-78 297.0 177 81.4
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 2.0e-78 296.6 176 84.1
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 2.6e-78 296.2 175 84.0
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 3.3e-78 295.8 178 80.3
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 4.4e-78 295.4 176 83.0
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 7.4e-78 294.7 175 82.3
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 9.7e-78 294.3 180 80.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.3e-77 293.9 177 80.8
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 2.8e-77 292.7 175 82.3
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 3.7e-77 292.4 178 79.8
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 4.8e-77 292.0 176 82.4
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.4e-76 290.4 178 77.5
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.1e-76 289.3 170 84.1
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.1e-76 288.9 174 82.2
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 5.3e-76 288.5 176 80.1
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 7.0e-76 288.1 176 81.2
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 9.1e-76 287.7 175 81.1
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 9.1e-76 287.7 175 81.1
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.6e-75 287.0 176 81.8
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.6e-75 287.0 176 81.8
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 1.6e-75 287.0 178 78.7
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 1.6e-75 287.0 178 78.7
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 2.0e-75 286.6 176 78.4
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.6e-75 286.2 178 77.5
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 2.6e-75 286.2 170 81.8
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 3.5e-75 285.8 174 80.5
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.5e-75 285.4 176 81.8
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 7.7e-75 284.6 176 77.8
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 7.7e-75 284.6 170 83.5
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.0e-74 284.3 176 81.2
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 1.0e-74 284.3 176 79.0
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.7e-74 283.5 177 78.0
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.7e-74 283.5 174 80.5
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.7e-74 283.5 177 78.5
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.7e-74 283.5 164 85.4
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.2e-74 283.1 160 85.0
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 3.8e-74 282.3 182 75.8
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 3.8e-74 282.3 178 77.0
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 3.8e-74 282.3 173 79.8
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 5.0e-74 282.0 170 81.2
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 6.5e-74 281.6 176 79.0
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 6.5e-74 281.6 176 78.4
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.5e-74 281.2 178 78.1
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.5e-73 280.4 176 79.5
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.9e-73 280.0 176 77.8
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.9e-73 280.0 176 77.8
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 4.2e-73 278.9 176 78.4
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 4.2e-73 278.9 176 77.8
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 5.5e-73 278.5 179 76.5
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 5.5e-73 278.5 170 81.2
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 9.4e-73 277.7 176 76.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.2e-72 277.3 183 75.4
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 2.1e-72 276.6 159 82.4
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 2.7e-72 276.2 199 71.9
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.7e-72 276.2 160 84.4
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.7e-72 276.2 161 81.4
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.4e-71 273.9 159 81.1
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.4e-71 273.9 157 82.2
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.4e-71 273.9 178 75.3
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.8e-71 273.5 156 83.3
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 1.8e-71 273.5 178 74.7
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 2.3e-71 273.1 177 75.7
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 2.3e-71 273.1 177 76.3
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.3e-71 273.1 157 82.2
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 2.3e-71 273.1 159 80.5
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 4.0e-71 272.3 154 85.1
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 4.0e-71 272.3 181 74.6
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 4.0e-71 272.3 180 73.3
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 8.8e-71 271.2 156 83.3
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.2e-70 270.8 175 76.6
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 3.3e-70 269.2 176 76.1
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.3e-70 269.2 178 74.7
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 4.4e-70 268.9 187 71.7
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 4.4e-70 268.9 170 78.8
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.4e-70 268.9 178 73.0
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 5.7e-70 268.5 175 76.0
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 5.7e-70 268.5 164 77.4
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.7e-70 268.5 164 77.4
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 9.7e-70 267.7 173 74.0
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.2e-69 266.5 176 73.3
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 4.8e-69 265.4 157 80.3
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 4.8e-69 265.4 173 74.0
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 8.2e-69 264.6 176 73.3
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.1e-68 264.2 168 77.4
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.8e-68 263.5 157 80.3
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 2.4e-68 263.1 157 79.6
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.1e-68 262.7 160 77.5
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 5.3e-68 261.9 168 76.8
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 5.3e-68 261.9 157 79.6
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 7.0e-68 261.5 157 80.3
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 3.5e-67 259.2 191 68.1
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-67 259.2 173 72.3
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 5.9e-67 258.5 159 76.1
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 5.9e-67 258.5 174 75.9
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 2.2e-66 256.5 173 71.1
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.9e-66 256.1 168 74.4
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 2.9e-66 256.1 155 80.0
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 3.8e-66 255.8 143 86.7
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 4.2e-65 252.3 143 85.3
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 4.2e-65 252.3 176 69.3
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.5e-65 251.9 142 85.2
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-64 250.8 165 74.5
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.6e-64 249.2 142 84.5
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 6.1e-64 248.4 137 88.3
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 8.0e-64 248.1 169 72.2
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.4e-63 247.3 144 83.3
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.8e-63 246.9 172 70.9
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 5.2e-63 245.4 169 71.6
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 4.4e-62 242.3 146 82.2
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.7e-61 239.2 137 86.1
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.8e-61 238.8 158 72.2
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 8.3e-61 238.0 139 80.6
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.2e-57 225.7 176 67.0
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 2.2e-53 213.4 163 64.4
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 6.3e-53 211.8 170 60.6
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 4.1e-52 209.1 141 74.5
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 2.3e-50 203.4 111 91.0
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 3.8e-50 202.6 172 54.1
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.6e-50 201.8 157 66.2
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 2.5e-49 199.9 115 83.5
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.2e-46 191.0 115 85.2
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 9.8e-46 188.0 143 65.7
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 4.9e-45 185.7 109 79.8
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.3e-42 176.8 126 68.3
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 6.6e-42 175.3 113 74.3
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 4.0e-39 166.0 150 54.0
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.4e-36 157.5 100 75.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 5.4e-36 155.6 112 67.9
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.2e-35 154.5 128 60.9
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.1e-32 143.7 75 90.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.1e-31 139.8 116 64.7
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.6e-30 136.7 116 63.8
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.5e-30 135.2 78 80.8
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.4e-29 132.1 72 86.1
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.4e-28 131.0 93 69.9
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.4e-28 131.0 186 44.6
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.5e-27 126.3 75 82.7
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 8.6e-26 121.7 66 90.9
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.5e-25 120.2 131 50.4
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 9.5e-25 118.2 83 72.3
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 1.5e-22 110.9 115 58.3
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.1e-20 102.1 78 67.9
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.3e-18 97.8 66 69.7
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 4.3e-17 92.8 61 72.1
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 6.2e-16 89.0 58 72.4
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 4.0e-15 86.3 58 67.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.6e-06 57.0 33 78.8


User provided reference genes

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