Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 2.6e-63 245.4 136 100.0
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 2.9e-46 188.7 130 76.9
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 6.4e-46 187.6 137 76.6
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 6.4e-46 187.6 136 74.3
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 1.1e-45 186.8 138 76.1
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 4.2e-45 184.9 136 73.5
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 4.2e-45 184.9 137 75.2
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 4.2e-45 184.9 126 77.0
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 4.2e-45 184.9 126 77.0
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 5.4e-45 184.5 138 76.1
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 7.1e-45 184.1 137 74.5
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 9.3e-45 183.7 137 73.7
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 9.3e-45 183.7 137 73.7
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 9.3e-45 183.7 137 73.0
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 9.3e-45 183.7 138 75.4
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 1.2e-44 183.3 136 73.5
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 1.2e-44 183.3 137 73.7
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.2e-44 183.3 136 73.5
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 1.2e-44 183.3 136 72.1
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 1.6e-44 183.0 137 73.7
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 1.6e-44 183.0 136 72.8
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 1.6e-44 183.0 136 73.5
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 1.6e-44 183.0 136 73.5
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 2.1e-44 182.6 132 74.2
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 2.1e-44 182.6 137 73.7
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.1e-44 182.6 136 75.0
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 2.1e-44 182.6 136 73.5
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 2.7e-44 182.2 136 72.8
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 2.7e-44 182.2 137 73.0
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 2.7e-44 182.2 137 73.0
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 2.7e-44 182.2 137 73.0
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 2.7e-44 182.2 137 73.0
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 2.7e-44 182.2 137 73.7
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 2.7e-44 182.2 133 72.9
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 3.5e-44 181.8 137 74.5
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 3.5e-44 181.8 137 74.5
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 3.5e-44 181.8 126 76.2
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.5e-44 181.8 137 73.0
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 4.6e-44 181.4 136 72.8
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 6.0e-44 181.0 137 73.7
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 6.0e-44 181.0 137 72.3
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 6.0e-44 181.0 136 74.3
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 7.9e-44 180.6 137 73.0
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 7.9e-44 180.6 136 74.3
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 7.9e-44 180.6 136 72.1
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.0e-43 180.3 136 72.8
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.3e-43 179.9 137 71.5
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 1.3e-43 179.9 136 73.5
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.3e-43 179.9 136 73.5
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.8e-43 179.5 138 74.6
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 1.8e-43 179.5 138 74.6
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.8e-43 179.5 137 73.0
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.8e-43 179.5 137 73.0
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.8e-43 179.5 136 72.1
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 1.8e-43 179.5 137 73.7
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.8e-43 179.5 137 72.3
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 2.3e-43 179.1 138 73.9
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.3e-43 179.1 137 77.4
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 2.3e-43 179.1 135 71.9
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.3e-43 179.1 136 72.8
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 3.0e-43 178.7 136 72.8
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 3.9e-43 178.3 136 72.1
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 3.9e-43 178.3 136 72.1
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 3.9e-43 178.3 134 73.9
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.9e-43 178.3 137 70.8
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 5.1e-43 177.9 136 72.1
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 6.7e-43 177.6 136 70.6
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 6.7e-43 177.6 133 69.9
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 8.7e-43 177.2 138 72.5
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 8.7e-43 177.2 138 72.5
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 8.7e-43 177.2 138 72.5
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 8.7e-43 177.2 138 72.5
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.7e-43 177.2 134 71.6
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.1e-42 176.8 137 72.3
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 1.5e-42 176.4 137 72.3
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 1.5e-42 176.4 137 72.3
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 1.9e-42 176.0 134 70.9
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.9e-42 176.0 138 70.3
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.9e-42 176.0 138 70.3
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 1.9e-42 176.0 137 72.3
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.9e-42 176.0 135 72.6
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 2.5e-42 175.6 138 71.7
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 2.5e-42 175.6 136 72.8
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 3.3e-42 175.3 138 71.7
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 3.3e-42 175.3 138 71.7
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 4.3e-42 174.9 139 68.3
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 4.3e-42 174.9 136 71.3
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 5.6e-42 174.5 138 71.0
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 5.6e-42 174.5 138 71.7
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 5.6e-42 174.5 138 72.5
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 5.6e-42 174.5 136 69.9
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 5.6e-42 174.5 136 69.9
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 5.6e-42 174.5 128 75.0
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 5.6e-42 174.5 136 69.9
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 7.4e-42 174.1 130 73.1
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 7.4e-42 174.1 137 70.8
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 7.4e-42 174.1 141 70.2
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 9.6e-42 173.7 136 70.6
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.3e-41 173.3 137 69.3
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.3e-41 173.3 136 69.1
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.6e-41 172.9 139 69.1
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 3.7e-41 171.8 139 68.3
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 3.7e-41 171.8 138 68.8
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 6.2e-41 171.0 135 69.6
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 6.2e-41 171.0 137 69.3
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 6.2e-41 171.0 136 67.6
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 1.1e-40 170.2 136 69.1
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 1.1e-40 170.2 138 69.6
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.1e-40 170.2 136 70.6
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 1.4e-40 169.9 137 70.8
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 1.4e-40 169.9 138 71.0
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.8e-40 169.5 136 68.4
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 3.1e-40 168.7 136 64.7
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 4.0e-40 168.3 136 69.1
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 4.0e-40 168.3 126 73.8
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 4.0e-40 168.3 135 69.6
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 6.9e-40 167.5 138 67.4
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 6.9e-40 167.5 139 70.5
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.2e-39 166.8 92 90.2
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 2.0e-39 166.0 169 59.8
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 2.6e-39 165.6 137 69.3
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 5.8e-39 164.5 134 68.7
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 5.8e-39 164.5 127 69.3
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 7.6e-39 164.1 134 67.9
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 9.9e-39 163.7 136 67.6
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.3e-38 163.3 136 66.2
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 2.2e-38 162.5 133 67.7
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 3.2e-37 158.7 111 72.1
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 1.2e-36 156.8 92 83.7
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 6.0e-36 154.5 138 65.2
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.9e-35 151.8 135 65.9
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.9e-34 149.4 140 62.9
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 1.9e-34 149.4 139 61.2
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 4.0e-32 141.7 121 65.3
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 4.5e-31 138.3 135 57.8
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 5.8e-31 137.9 78 89.7
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.9e-30 135.6 77 89.6
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 2.1e-28 129.4 135 58.5
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 9.7e-26 120.6 119 55.5
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 1.4e-21 106.7 66 81.8
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 3.3e-18 95.5 86 60.5
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 2.1e-12 76.3 48 79.2
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.5e-10 70.1 64 60.9
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 7.4e-10 67.8 78 47.4
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 8.2e-09 64.3 92 41.3


User provided reference genes

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