Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 2.7e-152 542.0 273 100.0
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.2e-115 420.2 276 76.8
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 6.7e-111 404.4 273 77.7
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 2.1e-96 356.3 278 63.7
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 4.7e-96 355.1 273 64.5
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 8.0e-96 354.4 275 64.7
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 1.0e-95 354.0 273 66.7
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.8e-95 353.2 275 68.4
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 5.2e-95 351.7 274 65.7
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 6.7e-95 351.3 274 65.3
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 9.7e-94 347.4 274 63.9
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 3.7e-93 345.5 278 61.9
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 4.8e-93 345.1 273 63.4
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 1.2e-91 340.5 278 61.2
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.6e-91 340.1 284 63.4
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.0e-91 339.7 284 63.4
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.7e-91 339.3 278 60.8
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.5e-91 339.0 280 63.9
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 4.5e-91 338.6 282 63.5
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 4.5e-91 338.6 284 60.9
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 1.3e-90 337.0 273 62.3
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 2.9e-90 335.9 274 62.0
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.9e-90 335.9 280 63.6
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 6.5e-90 334.7 273 59.7
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 1.1e-89 334.0 275 62.2
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 1.5e-89 333.6 274 59.9
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 1.9e-89 333.2 275 60.4
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 1.9e-89 333.2 275 60.0
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 2.5e-89 332.8 279 60.9
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 9.4e-89 330.9 275 60.7
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.2e-88 330.5 274 62.4
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 2.1e-88 329.7 274 61.3
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.1e-88 329.7 275 59.6
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 1.0e-87 327.4 269 61.0
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 1.8e-87 326.6 272 60.3
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 1.8e-87 326.6 283 57.2
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 2.3e-87 326.2 270 61.5
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 5.2e-87 325.1 275 60.7
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 6.8e-87 324.7 276 60.5
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 6.8e-87 324.7 241 68.5
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 8.8e-87 324.3 274 57.7
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 8.8e-87 324.3 275 60.4
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 2.0e-86 323.2 272 59.6
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 3.4e-86 322.4 274 61.3
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 4.4e-86 322.0 272 59.2
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 4.4e-86 322.0 275 56.7
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 4.4e-86 322.0 273 59.3
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 5.7e-86 321.6 284 59.2
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 5.7e-86 321.6 272 59.2
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 5.7e-86 321.6 272 59.9
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 5.7e-86 321.6 272 59.9
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 9.8e-86 320.9 272 59.6
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 9.8e-86 320.9 272 59.2
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 9.8e-86 320.9 272 59.9
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 9.8e-86 320.9 272 59.2
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 9.8e-86 320.9 275 59.6
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 1.3e-85 320.5 270 61.1
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.7e-85 320.1 272 59.2
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.2e-85 319.7 272 58.8
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 2.8e-85 319.3 272 59.6
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 2.8e-85 319.3 272 56.2
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 1.1e-84 317.4 272 59.6
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 1.4e-84 317.0 272 59.6
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 1.4e-84 317.0 272 59.2
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 4.1e-84 315.5 273 58.2
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 9.1e-84 314.3 262 62.2
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 1.2e-83 313.9 272 57.7
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 1.6e-83 313.5 281 58.7
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 2.0e-83 313.2 273 56.8
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 2.7e-83 312.8 273 58.2
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 4.5e-83 312.0 295 55.6
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 4.5e-83 312.0 274 56.2
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 4.5e-83 312.0 230 67.8
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.3e-82 310.5 277 56.0
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 2.9e-82 309.3 273 57.1
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.5e-81 307.0 272 54.0
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.9e-81 306.6 272 57.4
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 2.5e-81 306.2 280 56.8
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 4.2e-81 305.4 279 57.3
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 7.2e-81 304.7 283 55.1
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 1.2e-80 303.9 279 56.6
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 3.6e-80 302.4 272 53.7
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 8.0e-80 301.2 278 59.4
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 3.0e-79 299.3 273 54.6
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 1.5e-78 297.0 268 54.1
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 2.0e-78 296.6 282 53.5
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 2.6e-78 296.2 330 48.8
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 3.4e-78 295.8 281 55.5
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 4.4e-78 295.4 229 67.2
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 7.5e-78 294.7 268 53.7
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 9.8e-78 294.3 293 51.2
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 2.2e-77 293.1 273 55.3
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 2.8e-77 292.7 238 61.8
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 2.8e-77 292.7 271 56.5
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 2.8e-77 292.7 220 65.5
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 1.1e-76 290.8 278 52.5
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 1.4e-76 290.4 272 54.0
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.5e-75 285.8 217 65.4
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 4.5e-75 285.4 209 65.6
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 1.5e-73 280.4 186 72.0
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 2.5e-73 279.6 279 54.1
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 5.6e-73 278.5 279 51.3
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 6.1e-72 275.0 197 64.5
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 8.0e-72 274.6 304 50.0
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 6.8e-71 271.6 207 64.3
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 2.0e-70 270.0 281 49.1
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 1.3e-69 267.3 271 50.9
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 2.9e-69 266.2 209 65.1
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 6.4e-69 265.0 266 50.8
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 1.9e-68 263.5 270 50.4
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 4.1e-68 262.3 184 67.4
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 7.0e-68 261.5 234 57.3
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 9.2e-68 261.2 194 66.5
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 6.0e-67 258.5 255 54.5
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 7.8e-67 258.1 294 50.0
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 5.0e-66 255.4 283 47.3
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.9e-65 253.4 265 53.2
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 1.4e-63 247.3 191 64.9
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.2e-60 236.1 213 55.9
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.6e-59 233.8 216 56.5
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 9.5e-57 224.6 230 51.7
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.2e-56 224.2 195 56.4
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.0e-55 219.2 195 57.9
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.3e-53 211.5 162 64.8
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 1.9e-49 200.3 279 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 4.2e-44 182.6 246 38.6
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 5.3e-39 165.6 190 48.9
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 9.0e-39 164.9 218 45.0
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 1.3e-37 161.0 190 48.9
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.3e-37 161.0 117 65.8
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 1.4e-36 157.5 201 41.8
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 3.5e-35 152.9 119 65.5
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 3.9e-34 149.4 119 62.2
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 7.3e-33 145.2 123 61.8
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.1e-32 143.7 96 69.8
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 1.4e-31 141.0 270 32.6
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.0e-23 112.8 85 64.7
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 4.6e-19 99.4 193 30.6
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.3e-18 97.8 88 54.5
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.0e-18 96.7 121 43.8
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.0e-18 96.7 130 42.3
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 2.0e-14 84.0 71 54.9
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 5.0e-13 79.3 105 39.0
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.1e-12 78.2 70 60.0
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.9e-12 77.4 135 39.3
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 4.6e-11 72.8 202 29.7
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 1.8e-10 70.9 46 73.9
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 5.1e-10 69.3 97 41.2
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 1.1e-09 68.2 106 30.2
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.2e-08 63.9 46 63.0
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 6.3e-08 62.4 56 53.6
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 1.8e-07 60.8 41 68.3
arahy.Tifrunner.gnm1.ann1.ZRCJ38 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.0e-05 55.1 64 48.4


User provided reference genes

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