Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 8.4e-179 630.2 303 100.0
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.4e-109 400.2 360 60.6
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 4.1e-109 398.7 339 62.5
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.7e-102 376.7 306 64.4
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 1.7e-99 366.7 321 61.1
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 2.6e-87 326.2 338 53.0
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 4.4e-87 325.5 280 57.9
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 4.4e-87 325.5 297 56.6
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 4.4e-87 325.5 295 56.3
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 5.7e-87 325.1 304 54.9
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 9.8e-87 324.3 271 59.0
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 1.3e-86 323.9 271 59.0
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 2.9e-86 322.8 274 58.4
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 3.7e-86 322.4 261 59.0
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 3.2e-85 319.3 259 61.0
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 5.4e-85 318.5 261 58.6
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 9.2e-85 317.8 261 60.2
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 1.2e-84 317.4 268 58.6
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 2.0e-84 316.6 334 49.1
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 2.0e-84 316.6 315 55.2
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 2.7e-84 316.2 342 50.6
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 4.6e-84 315.5 297 55.6
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 5.9e-84 315.1 305 54.4
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 1.0e-83 314.3 340 51.5
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 1.0e-83 314.3 274 57.7
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 1.3e-83 313.9 327 51.1
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 1.3e-83 313.9 308 54.5
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 2.3e-83 313.2 272 58.1
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 3.9e-83 312.4 308 53.2
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 1.9e-82 310.1 329 50.5
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 5.6e-82 308.5 255 58.8
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 1.2e-81 307.4 275 56.4
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 1.2e-81 307.4 278 56.8
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 4.7e-81 305.4 326 48.5
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 6.2e-81 305.1 319 52.0
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 4.0e-80 302.4 260 56.9
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 5.2e-80 302.0 256 57.4
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 8.9e-80 301.2 275 53.5
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 1.2e-79 300.8 294 53.1
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 1.5e-79 300.4 311 53.7
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 1.5e-79 300.4 257 57.6
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 2.0e-79 300.1 273 54.6
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 4.4e-79 298.9 262 55.7
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 9.8e-79 297.7 276 54.3
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 1.7e-78 297.0 305 50.8
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 2.2e-78 296.6 370 47.0
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 6.4e-78 295.0 308 51.6
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 1.1e-77 294.3 286 53.5
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 2.4e-77 293.1 327 48.0
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 2.4e-77 293.1 276 55.1
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 5.4e-77 292.0 323 48.3
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 1.2e-76 290.8 290 52.1
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 1.6e-76 290.4 273 54.2
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 2.0e-76 290.0 285 53.0
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 2.7e-76 289.7 304 51.6
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 1.7e-75 287.0 280 53.6
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 6.6e-75 285.0 255 55.3
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 6.6e-75 285.0 255 55.3
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 6.6e-75 285.0 281 51.2
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 6.6e-75 285.0 274 54.0
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 1.5e-74 283.9 268 53.0
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 1.5e-74 283.9 257 54.9
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 4.3e-74 282.3 255 54.9
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 1.2e-73 280.8 341 47.5
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 6.2e-73 278.5 237 57.8
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 8.1e-73 278.1 256 54.3
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 1.1e-72 277.7 263 53.2
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 1.4e-72 277.3 256 57.0
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 1.8e-72 276.9 272 53.7
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 2.3e-72 276.6 248 56.9
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 2.9e-70 269.6 242 55.4
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 8.3e-70 268.1 309 47.6
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 2.1e-68 263.5 279 50.9
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 2.7e-68 263.1 272 53.3
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 6.0e-68 261.9 248 52.4
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 2.3e-67 260.0 241 54.4
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 3.9e-67 259.2 241 54.4
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 3.9e-67 259.2 272 52.6
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 5.1e-67 258.8 241 53.9
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 2.9e-62 243.0 202 58.4
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-59 233.8 211 54.0
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 2.8e-57 226.5 300 44.3
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 4.2e-53 212.6 186 57.5
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 9.9e-47 191.4 209 50.2
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 8.4e-46 188.3 251 43.0
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 8.1e-41 171.8 249 40.2
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 1.4e-40 171.0 113 67.3
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 2.4e-40 170.2 108 67.6
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 9.9e-39 164.9 185 49.2
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 8.4e-38 161.8 192 49.5
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 4.6e-36 156.0 259 36.7
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 3.9e-35 152.9 245 38.8
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 2.1e-33 147.1 129 54.3
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 4.0e-32 142.9 83 72.3
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 6.0e-28 129.0 80 68.8
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 1.6e-25 120.9 138 49.3
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 5.3e-24 115.9 84 60.7
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 5.5e-21 105.9 69 63.8
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 9.4e-21 105.1 277 31.0
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 5.1e-19 99.4 105 49.5
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 5.1e-19 99.4 105 49.5
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 5.9e-15 85.9 87 52.9
Hund18614 Selenicereus undatus HOM05D007092 ORTHO05D008947 2.9e-14 83.6 116 46.6
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 5.5e-13 79.3 77 55.8
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 5.5e-13 79.3 77 55.8
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 2.7e-12 77.0 63 54.0
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 2.7e-12 77.0 63 54.0
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 2.3e-11 73.9 59 57.6
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 7.4e-10 68.9 54 59.3
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.7e-09 67.8 105 41.9
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 4.1e-08 63.2 43 55.8
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 1.5e-07 61.2 45 55.6
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 5.9e-07 59.3 60 43.3
TAR627G0568 Trochodendron aralioides HOM05D000264 ORTHO05D000152 5.9e-07 59.3 47 53.2
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 8.5e-06 55.5 31 71.0


User provided reference genes

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