Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 1.8e-184 649.0 321 100.0
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 7.6e-138 494.2 318 77.7
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 5.1e-134 481.5 316 74.7
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 1.2e-130 470.3 339 73.2
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 5.8e-130 468.0 314 74.5
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 2.1e-124 449.5 328 69.2
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 1.4e-120 436.8 318 67.9
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 4.2e-120 435.3 315 68.3
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 8.7e-118 427.6 327 65.4
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 3.3e-117 425.6 318 66.0
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 4.3e-117 425.2 319 64.6
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 1.6e-116 423.3 320 66.6
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.2e-114 417.2 327 64.8
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 2.6e-114 416.0 320 65.6
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 3.4e-114 415.6 331 64.4
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 4.5e-114 415.2 326 64.4
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 4.5e-114 415.2 316 65.2
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 2.9e-113 412.5 315 64.1
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 8.4e-113 411.0 314 67.2
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 8.4e-113 411.0 315 63.5
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 1.1e-112 410.6 319 63.9
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 3.2e-112 409.1 320 64.4
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.2e-111 407.1 222 85.1
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 1.2e-111 407.1 317 63.1
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 1.6e-111 406.8 319 64.6
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 1.0e-110 404.1 255 72.9
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 2.3e-110 402.9 298 66.1
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 3.0e-110 402.5 315 61.6
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 5.1e-110 401.7 330 63.0
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 1.1e-109 400.6 326 62.9
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 1.9e-109 399.8 320 63.8
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 3.3e-109 399.1 316 63.0
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 4.3e-109 398.7 316 62.7
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 2.8e-108 396.0 317 63.1
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 2.8e-108 396.0 317 63.1
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 3.7e-108 395.6 316 63.0
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 1.4e-107 393.7 317 62.8
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 1.8e-107 393.3 320 62.5
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 2.4e-107 392.9 322 61.8
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 2.4e-107 392.9 324 63.0
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.4e-107 392.9 315 64.1
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 2.4e-107 392.9 324 61.1
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 3.1e-107 392.5 321 61.4
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 3.1e-107 392.5 324 63.0
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 4.1e-107 392.1 320 62.5
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 4.1e-107 392.1 320 62.5
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 4.1e-107 392.1 320 62.5
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 1.5e-106 390.2 317 61.5
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 1.5e-106 390.2 318 61.9
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 2.0e-106 389.8 305 62.6
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 4.5e-106 388.7 315 62.5
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 7.7e-106 387.9 318 61.9
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.3e-105 387.1 315 63.5
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 2.9e-105 386.0 315 61.9
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 5.0e-105 385.2 319 60.5
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 9.4e-104 380.9 338 58.9
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 7.9e-103 377.9 322 61.2
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 7.9e-103 377.9 323 61.0
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 3.0e-102 375.9 320 60.9
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 1.5e-101 373.6 303 59.4
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 2.0e-101 373.2 313 58.1
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 3.3e-101 372.5 328 60.4
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 3.3e-101 372.5 313 58.1
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 2.2e-100 369.8 280 63.6
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 4.8e-100 368.6 322 58.4
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 6.3e-100 368.2 296 61.8
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 2.4e-99 366.3 318 57.9
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 3.1e-99 365.9 296 61.5
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 5.9e-98 361.7 320 58.8
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 3.8e-97 359.0 322 57.5
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 8.5e-97 357.8 321 57.0
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 1.1e-96 357.5 314 61.1
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 1.4e-96 357.1 330 57.0
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 2.5e-96 356.3 314 60.8
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 4.2e-96 355.5 317 56.5
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 1.2e-95 354.0 308 56.8
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 1.6e-95 353.6 279 62.4
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 2.1e-95 353.2 401 48.6
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 4.7e-95 352.1 327 56.9
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 6.1e-95 351.7 338 53.6
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 6.1e-95 351.7 320 57.2
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 1.0e-94 350.9 308 56.8
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 1.4e-94 350.5 241 66.4
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 1.4e-94 350.5 425 47.8
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 1.4e-94 350.5 300 57.7
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 3.0e-94 349.4 338 53.8
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 5.1e-94 348.6 321 55.8
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 2.6e-93 346.3 307 57.0
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 5.7e-93 345.1 286 58.0
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 1.3e-92 344.0 286 58.0
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.1e-91 340.9 303 55.4
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 5.3e-91 338.6 273 60.4
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 7.0e-91 338.2 336 56.0
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.5e-88 329.7 313 57.2
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.0e-86 324.3 241 60.2
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.1e-85 320.9 272 56.6
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 3.1e-83 312.8 244 62.7
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 1.2e-82 310.8 277 57.0
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 1.0e-73 281.2 247 60.7
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 1.5e-72 277.3 258 51.2
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 1.4e-70 270.8 294 47.6
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 6.3e-68 261.9 158 76.6
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 8.9e-62 241.5 269 50.9
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 4.4e-61 239.2 310 42.3
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 8.3e-60 235.0 243 48.1
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 7.0e-59 231.9 255 48.6
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 7.8e-58 228.4 267 42.3
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 2.9e-57 226.5 246 44.3
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 3.0e-49 199.9 130 68.5
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 3.3e-48 196.4 159 66.0
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 1.6e-47 194.1 159 65.4
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 1.1e-43 181.4 194 47.9
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 7.1e-43 178.7 160 61.2
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 1.4e-38 164.5 162 56.2
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 6.4e-36 155.6 110 69.1
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 1.6e-34 151.0 135 62.2
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 4.3e-32 142.9 91 70.3
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 4.3e-32 142.9 132 59.1
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 5.6e-32 142.5 150 45.3
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 2.4e-30 137.1 106 58.5
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 1.4e-27 127.9 76 73.7
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 1.2e-26 124.8 140 47.9
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 5.1e-25 119.4 74 67.6
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 8.7e-25 118.6 113 49.6
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 3.3e-24 116.7 132 46.2
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 9.6e-24 115.2 263 30.0
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.5e-18 96.7 111 55.0
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 4.6e-18 96.3 111 54.1
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 6.6e-17 92.4 148 39.2
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.5e-16 90.5 88 58.0
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 2.5e-16 90.5 104 41.3
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 5.6e-16 89.4 244 27.5
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 8.1e-15 85.5 84 56.0
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 1.4e-14 84.7 189 30.7
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 9.0e-14 82.0 81 56.8
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 9.0e-14 82.0 239 29.3
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.2e-12 77.4 48 66.7
FAN14G3055 Fragaria x ananassa HOM05D002283 ORTHO05D005725 3.8e-12 76.6 62 62.9
CBR_g45943 Chara braunii HOM05D006013 ORTHO05D007383 3.9e-09 66.6 244 23.8
Sc25g0004990 Simmondsia chinensis HOM05D006013 ORTHO05D007383 1.1e-08 65.1 258 26.4
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 1.5e-08 64.7 262 24.8
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 2.5e-08 63.9 119 39.5
FvH4_6g36141 Fragaria vesca HOM05D002283 ORTHO05D005725 7.4e-08 62.4 83 44.6
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 3.7e-07 60.1 260 24.6
MBI01_g13088_MAGBIO Magnolia biondii HOM05D006013 ORTHO05D007383 6.2e-07 59.3 302 24.5


User provided reference genes

Program Settings