Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 0.0e+00 1099.0 596 100.0
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 3.0e-196 689.1 550 70.9
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 3.4e-192 675.6 496 76.2
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 1.6e-173 613.6 575 65.2
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 1.2e-168 597.4 572 64.2
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 4.2e-166 589.0 558 63.6
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 2.0e-160 570.1 598 60.0
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.2e-158 562.4 584 59.9
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 5.5e-158 562.0 557 62.3
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 9.4e-158 561.2 586 60.2
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 4.7e-157 558.9 547 62.5
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 1.1e-155 554.3 587 58.8
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 2.8e-154 549.7 573 62.0
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 1.5e-152 543.9 586 58.9
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 5.9e-152 542.0 585 59.5
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.2e-151 540.0 554 59.9
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 2.5e-150 536.6 557 61.6
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 1.6e-149 533.9 551 60.8
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 2.1e-149 533.5 572 60.7
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 1.4e-148 530.8 550 59.8
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.1e-147 527.7 582 58.1
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.1e-147 527.7 581 57.7
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 2.6e-147 526.6 551 59.9
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 1.7e-146 523.9 582 56.9
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 5.9e-144 515.4 557 55.7
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.9e-144 515.4 557 58.0
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 7.7e-144 515.0 525 61.3
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 7.7e-144 515.0 575 57.0
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.0e-143 514.6 553 57.7
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 1.7e-143 513.8 494 61.7
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.2e-143 513.5 532 60.0
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 3.8e-143 512.7 555 58.4
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 3.8e-143 512.7 581 58.9
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 3.2e-142 509.6 553 58.0
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 4.2e-142 509.2 552 58.3
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 1.0e-140 504.6 580 56.2
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 1.4e-140 504.2 553 57.9
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 1.8e-140 503.8 561 58.3
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 2.3e-140 503.4 553 55.5
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 4.0e-140 502.7 614 53.6
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 5.2e-140 502.3 573 56.9
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 8.8e-140 501.5 518 59.5
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 2.0e-139 500.4 551 58.1
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 9.7e-139 498.0 530 58.9
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 3.7e-138 496.1 558 55.9
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 4.8e-138 495.7 584 54.3
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 6.3e-138 495.4 503 62.6
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 1.4e-137 494.2 548 55.5
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.4e-137 494.2 573 55.7
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 5.3e-137 492.3 553 57.5
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.6e-136 490.7 554 57.9
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 7.7e-136 488.4 594 54.4
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 3.8e-135 486.1 562 55.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 1.2e-133 481.1 553 56.8
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.2e-133 481.1 553 56.8
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 3.6e-133 479.6 577 53.2
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 2.3e-132 476.9 560 55.5
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 4.0e-132 476.1 510 59.0
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 5.7e-131 472.2 586 53.4
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 7.5e-131 471.9 555 55.9
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.3e-130 471.1 560 56.1
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 1.7e-130 470.7 554 57.0
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 2.8e-130 469.9 560 52.9
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 6.3e-130 468.8 678 48.1
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.4e-129 467.6 497 60.8
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 4.1e-129 466.1 597 52.6
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.6e-128 464.2 548 53.5
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 3.8e-127 459.5 624 49.8
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 9.5e-126 454.9 542 53.5
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 3.0e-124 449.9 557 51.7
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 4.0e-124 449.5 510 57.3
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 1.5e-123 447.6 607 50.4
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 5.7e-123 445.7 548 52.2
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 3.7e-122 443.0 537 54.2
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.3e-122 441.8 536 51.3
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.6e-120 437.6 562 51.8
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 2.0e-120 437.2 602 50.2
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 3.5e-120 436.4 499 56.7
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 4.5e-120 436.0 542 50.4
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 5.9e-120 435.6 575 50.8
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 6.6e-119 432.2 425 62.4
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 9.5e-118 428.3 544 50.7
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.2e-117 427.9 515 53.6
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.8e-116 424.1 547 52.3
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 2.0e-115 420.6 551 49.9
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 7.0e-113 412.1 475 56.4
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.5e-110 404.4 449 58.4
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 4.3e-110 402.9 475 57.1
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.5e-107 394.4 418 61.0
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 2.0e-107 394.0 552 48.2
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 2.7e-104 383.6 391 60.9
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 3.5e-104 383.3 373 62.5
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 2.3e-103 380.6 509 51.3
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 5.6e-102 375.9 550 46.4
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 4.7e-101 372.9 554 48.0
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 4.0e-100 369.8 554 47.8
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 4.0e-100 369.8 554 47.8
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 8.9e-100 368.6 556 48.2
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.2e-99 368.2 555 47.9
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 3.7e-98 363.2 511 47.9
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 4.9e-98 362.8 543 47.7
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 2.5e-78 297.4 485 46.0
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 4.3e-78 296.6 249 69.1
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 2.9e-74 283.9 341 56.6
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.4e-73 281.6 255 60.4
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 2.5e-70 270.8 218 66.5
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 2.2e-66 257.7 220 63.2
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.8e-55 221.5 239 51.0
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 3.0e-55 220.7 347 41.8
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 3.9e-55 220.3 239 51.9
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 5.1e-55 219.9 240 49.6
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.9e-54 218.0 239 51.5
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 4.2e-49 200.3 270 44.4
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 4.2e-49 200.3 242 48.8
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.1e-46 192.2 333 39.3
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 2.3e-39 167.9 178 56.7
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 8.8e-39 166.0 218 43.1
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 6.3e-37 159.8 239 44.8
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.3e-34 152.1 352 34.1
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 1.1e-33 149.1 296 36.5
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 1.5e-33 148.7 202 48.0
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.5e-33 147.9 271 36.9
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 5.5e-33 146.7 167 53.3
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.1e-32 144.8 161 51.6
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 3.1e-28 131.0 129 58.1
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 1.1e-25 122.5 162 48.8
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 3.6e-24 117.5 67 83.6
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 1.4e-23 115.5 198 43.9
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 2.0e-22 111.7 197 44.2
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.2e-18 98.2 85 61.2
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 1.6e-16 92.0 74 66.2
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 4.0e-15 87.4 151 51.0
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 8.8e-15 86.3 220 37.7
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 1.3e-13 82.4 108 59.3
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 9.1e-12 76.3 81 53.1
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 2.0e-11 75.1 76 53.9
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 5.9e-11 73.6 81 53.1
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 5.9e-11 73.6 68 63.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 1.0e-10 72.8 42 78.6
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 1.0e-10 72.8 42 78.6
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.0e-10 72.8 76 51.3
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 2.3e-10 71.6 41 82.9
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 2.9e-10 71.2 157 34.4
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 8.6e-10 69.7 51 70.6
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.1e-09 69.3 39 82.1
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 4.3e-09 67.4 166 34.3
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 1.6e-08 65.5 40 75.0
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 2.1e-08 65.1 70 55.7
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 2.1e-08 65.1 70 55.7
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 2.1e-08 65.1 70 55.7
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 4.7e-08 63.9 74 51.4
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 1.8e-07 62.0 43 69.8
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 8.9e-07 59.7 47 68.1
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 1.5e-06 58.9 52 53.8
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 9.8e-06 56.2 44 63.6


User provided reference genes

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