Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 0.0e+00 2091.2 1067 100.0
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1121.7 918 65.9
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 0.0e+00 1106.3 941 64.6
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1080.9 975 59.3
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 0.0e+00 1075.5 952 62.8
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 7.3e-312 1073.9 975 58.2
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 1.5e-311 1072.8 974 59.4
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 2.9e-311 1072.0 970 59.0
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 3.6e-311 1071.6 960 60.0
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 1.2e-309 1066.6 968 58.7
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 7.5e-307 1057.4 975 57.5
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 4.8e-306 1054.7 970 58.0
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 9.1e-305 1050.4 968 57.7
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 2.0e-304 1049.3 970 57.8
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 7.7e-304 1047.3 976 57.6
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 1.0e-303 1047.0 976 57.7
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 2.9e-303 1045.4 980 57.8
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 2.5e-302 1042.3 976 57.3
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 9.4e-302 1040.4 973 57.6
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 6.1e-301 1037.7 976 57.5
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 1.3e-295 1020.0 975 57.2
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 3.3e-294 1015.4 974 56.6
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 1.0e-292 1010.4 971 56.0
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 3.4e-291 1005.4 974 56.2
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 2.4e-289 999.2 972 55.5
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 1.2e-288 996.9 976 54.8
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.1e-286 990.3 984 55.5
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 2.1e-285 986.1 978 54.6
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 3.6e-285 985.3 975 53.4
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 1.0e-284 983.8 975 53.3
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 3.1e-284 982.2 979 55.2
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 3.1e-284 982.2 962 55.2
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 4.0e-284 981.9 975 53.2
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 8.9e-284 980.7 973 54.7
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 2.6e-283 979.2 977 54.8
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 4.4e-283 978.4 973 55.0
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 7.5e-283 977.6 976 54.6
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 1.3e-282 976.9 982 54.5
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 2.2e-282 976.1 1033 53.7
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 4.9e-282 974.9 977 54.5
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 2.4e-281 972.6 961 54.4
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 3.2e-281 972.2 975 52.5
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 5.4e-281 971.5 979 54.4
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 7.8e-280 967.6 991 54.3
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 1.7e-279 966.5 972 54.8
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 1.1e-278 963.8 974 54.2
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 1.9e-278 963.0 971 53.7
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 2.1e-277 959.5 968 54.0
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 1.5e-275 953.4 964 53.9
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.6e-275 952.6 987 54.1
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 9.8e-275 950.7 961 52.8
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 3.2e-273 945.7 940 54.5
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 9.2e-273 944.1 866 59.2
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 6.6e-271 937.9 969 53.1
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 2.5e-270 936.0 960 53.3
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 3.3e-270 935.6 968 52.4
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 1.1e-268 930.6 975 51.6
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 5.8e-267 924.9 970 51.1
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 8.3e-266 921.0 1001 52.1
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 5.4e-265 918.3 973 51.8
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 1.2e-264 917.1 970 52.0
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 2.5e-262 909.4 964 52.6
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 5.6e-262 908.3 1014 50.3
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 3.6e-261 905.6 967 50.8
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.1e-260 904.0 961 52.4
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 1.1e-260 904.0 932 54.0
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 2.0e-259 899.8 965 51.5
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 8.4e-258 894.4 985 49.7
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 2.3e-255 886.3 972 50.8
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 3.0e-255 885.9 972 50.6
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 8.7e-255 884.4 963 50.7
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 2.5e-254 882.9 855 56.5
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 9.6e-254 880.9 972 50.6
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 1.2e-253 880.6 962 50.3
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 9.0e-252 874.4 965 50.5
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 1.2e-251 874.0 956 50.6
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 7.6e-251 871.3 985 48.6
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 8.4e-250 867.8 960 50.7
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.1e-249 867.5 967 50.7
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.1e-249 867.5 944 51.3
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 5.4e-249 865.1 938 51.5
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 3.9e-247 859.0 960 50.8
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 2.5e-246 856.3 987 49.6
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 5.3e-244 848.6 965 49.3
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 2.5e-238 829.7 968 49.0
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 1.1e-236 824.3 956 49.1
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 1.4e-236 823.9 875 51.3
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.2e-235 820.8 989 47.6
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 3.0e-231 806.2 964 46.9
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 2.1e-229 800.0 869 51.0
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 3.9e-215 752.7 779 52.9
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 8.8e-215 751.5 748 53.7
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 5.7e-206 722.2 990 45.9
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.5e-174 617.8 538 59.9
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 7.5e-174 615.5 652 53.1
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.7e-173 614.4 652 52.9
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 4.1e-164 583.2 545 57.8
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 2.3e-154 550.8 572 54.9
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 6.4e-141 506.1 650 47.8
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 3.2e-132 477.2 340 70.0
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 3.3e-129 467.2 1001 32.7
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.6e-128 464.9 552 48.2
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 9.9e-126 455.7 1009 34.5
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 4.2e-116 423.7 930 33.9
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 2.7e-75 288.1 1132 26.3
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 2.3e-74 285.0 324 47.2
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 3.1e-71 274.6 1150 26.0
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.0e-61 243.0 374 39.3
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 2.5e-52 211.8 331 38.1
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 4.7e-51 207.6 549 31.3
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 8.0e-51 206.8 281 43.8
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 6.8e-50 203.8 326 40.5
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.9e-48 198.4 143 72.0
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.2e-43 183.0 148 68.9
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.3e-29 136.3 176 48.3
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 9.6e-28 130.2 149 45.6
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.2e-27 129.8 103 64.1
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 2.4e-26 125.6 435 29.0
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 3.2e-23 115.2 181 39.8
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.1e-18 100.1 142 38.0
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.7e-16 92.8 167 32.9
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 2.4e-15 89.0 219 33.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.1e-12 80.1 99 44.4
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 3.3e-12 78.6 156 40.4
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.3e-11 76.6 75 52.0
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 1.8e-10 72.8 63 52.4
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 3.1e-10 72.0 65 49.2
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 3.1e-10 72.0 65 49.2
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.2e-09 70.1 46 67.4
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.2e-09 70.1 46 69.6
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 2.6e-09 68.9 58 55.2
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 3.4e-09 68.6 151 29.1
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 3.4e-09 68.6 34 85.3
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 4.5e-09 68.2 54 57.4
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 2.9e-08 65.5 427 24.1
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 4.9e-08 64.7 44 61.4
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 1.9e-07 62.8 49 57.1
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 2.4e-07 62.4 64 50.0
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 3.5e-06 58.5 52 59.6
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 4.6e-06 58.2 40 62.5


User provided reference genes

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