Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 2.3e-207 725.3 368 100.0
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 7.8e-147 524.2 366 72.1
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 3.1e-143 512.3 363 71.6
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 6.0e-139 498.0 363 69.7
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 7.9e-139 497.7 359 70.2
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 2.5e-137 492.7 363 69.4
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 4.8e-136 488.4 360 69.7
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 4.0e-135 485.3 363 67.2
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 6.9e-135 484.6 366 66.4
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 3.4e-134 482.3 363 67.5
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 4.5e-134 481.9 359 68.2
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 7.6e-134 481.1 363 66.9
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.3e-133 480.3 363 64.2
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 3.8e-133 478.8 363 69.1
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 4.9e-133 478.4 361 67.0
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 1.1e-132 477.2 359 67.1
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.4e-132 476.9 361 66.8
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 4.2e-132 475.3 363 66.9
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 4.2e-132 475.3 362 66.9
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 2.7e-131 472.6 363 64.7
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 2.7e-131 472.6 362 67.1
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 3.5e-131 472.2 361 65.1
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 1.0e-130 470.7 380 64.5
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 1.0e-130 470.7 375 62.9
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 2.3e-130 469.5 360 66.4
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 5.1e-130 468.4 361 65.7
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 5.1e-130 468.4 366 67.2
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 5.1e-130 468.4 359 67.1
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 8.7e-130 467.6 340 70.3
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 1.5e-129 466.8 363 65.0
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 1.9e-129 466.5 373 63.8
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 2.5e-129 466.1 365 67.1
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 3.3e-129 465.7 374 65.0
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 9.6e-129 464.2 361 65.4
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 2.8e-128 462.6 375 63.2
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 2.8e-128 462.6 364 65.1
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 4.8e-128 461.8 365 65.2
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 4.8e-128 461.8 361 64.0
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 1.1e-127 460.7 361 67.9
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 1.1e-127 460.7 366 65.8
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 1.4e-127 460.3 362 65.2
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 1.8e-127 459.9 362 65.5
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 5.3e-127 458.4 364 64.6
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 9.0e-127 457.6 365 64.7
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 1.5e-126 456.8 363 64.2
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 2.6e-126 456.1 372 63.7
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 2.6e-126 456.1 363 62.5
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 5.8e-126 454.9 361 63.2
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 5.8e-126 454.9 359 63.0
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 7.6e-126 454.5 369 61.8
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 1.3e-125 453.8 359 61.3
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 2.9e-125 452.6 360 63.1
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 3.8e-125 452.2 361 64.3
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 6.5e-125 451.4 382 62.0
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 2.5e-124 449.5 359 62.1
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 4.2e-124 448.7 357 63.9
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 9.3e-124 447.6 336 68.8
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 2.7e-123 446.0 370 61.4
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 4.6e-123 445.3 359 62.7
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 6.0e-123 444.9 359 63.0
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 7.9e-123 444.5 387 60.2
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 1.0e-122 444.1 364 62.9
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 1.3e-122 443.7 373 62.5
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 3.9e-122 442.2 364 62.6
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 3.3e-121 439.1 363 61.7
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 5.7e-121 438.3 361 63.2
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 1.1e-119 434.1 361 62.0
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 5.3e-119 431.8 354 61.9
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 6.9e-119 431.4 361 63.2
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 1.2e-118 430.6 366 62.6
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 2.9e-117 426.0 364 60.4
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 8.5e-117 424.5 350 63.4
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 2.7e-115 419.5 383 60.8
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 3.6e-115 419.1 364 59.3
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 3.6e-115 419.1 363 58.4
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 6.7e-114 414.8 359 60.4
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 6.7e-114 414.8 423 55.8
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 3.7e-112 409.1 328 62.8
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.7e-107 392.1 387 55.8
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 7.9e-107 391.3 374 55.6
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 7.9e-107 391.3 354 61.0
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 3.3e-105 386.0 363 56.5
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 4.8e-104 382.1 345 58.8
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 1.1e-103 380.9 373 52.5
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 8.5e-101 371.3 329 57.8
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 5.2e-98 362.1 359 53.2
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 4.7e-91 339.0 238 71.4
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 6.1e-91 338.6 360 49.4
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 4.0e-90 335.9 238 72.7
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 2.8e-88 329.7 360 48.6
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 4.1e-87 325.9 238 70.6
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 1.2e-86 324.3 238 68.5
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 2.7e-86 323.2 238 69.7
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 2.7e-86 323.2 238 69.7
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 7.7e-86 321.6 238 69.7
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 1.5e-84 317.4 238 68.1
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 2.1e-83 313.5 238 67.2
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 4.8e-80 302.4 336 51.8
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 8.3e-80 301.6 292 57.2
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 1.4e-79 300.8 300 51.3
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 4.5e-78 295.8 361 49.9
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 2.8e-72 276.6 361 44.9
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.1e-71 274.6 371 46.1
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 3.7e-64 249.6 307 45.9
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 4.9e-64 249.2 303 47.2
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 1.1e-50 204.9 262 45.4
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 1.1e-42 178.3 366 35.8
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 6.4e-40 169.1 126 62.7
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 1.6e-38 164.5 351 31.1
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 7.8e-38 162.2 370 33.8
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.2e-35 154.8 133 57.9
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 2.8e-35 153.7 130 59.2
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 2.6e-33 147.1 105 68.6
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 1.7e-32 144.4 128 54.7
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 1.1e-31 141.7 127 57.5
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.1e-29 132.9 109 59.6
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 4.3e-28 129.8 90 72.2
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 2.7e-22 110.5 102 53.9
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.3e-21 108.2 111 49.5
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.6e-19 101.3 189 36.5
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 1.4e-15 88.2 94 46.8
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 9.3e-15 85.5 97 46.4
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.3e-13 81.6 242 32.2
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.1e-10 72.0 114 38.6
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.8e-10 71.2 104 41.3
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 5.3e-10 69.7 71 49.3
Sc05g0002580 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.8e-09 66.2 99 40.4
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.1e-07 62.0 153 34.0
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 2.5e-07 60.8 170 32.4
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 4.2e-07 60.1 140 33.6
Sc05g0002640 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.5e-07 59.7 35 82.9
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 7.1e-07 59.3 140 33.6
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 9.3e-07 58.9 140 34.3
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.2e-06 58.5 140 32.9
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 1.2e-06 58.5 145 31.0
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 2.1e-06 57.8 140 32.9
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 2.1e-06 57.8 160 29.4
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 2.7e-06 57.4 109 36.7
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 2.7e-06 57.4 131 37.4
Eucgr.D01807 Eucalyptus grandis HOM05D001916 ORTHO05D003272 3.5e-06 57.0 95 31.6
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 3.5e-06 57.0 166 33.1
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 3.5e-06 57.0 146 30.8
Phvul.007G277400 Phaseolus vulgaris HOM05D006451 ORTHO05D007680 4.6e-06 56.6 167 34.7
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 6.1e-06 56.2 149 35.6
GSVIVG01018026001 Vitis vinifera HOM05D006451 ORTHO05D007680 6.1e-06 56.2 170 35.3
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 7.9e-06 55.8 109 33.9
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 7.9e-06 55.8 113 36.3


User provided reference genes

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