Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 2.2e-232 808.5 389 100.0
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 1.1e-178 630.2 397 75.6
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 1.8e-170 602.8 389 73.0
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 9.1e-170 600.5 395 70.1
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 1.2e-169 600.1 393 72.3
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 5.9e-169 597.8 390 72.6
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 7.2e-167 590.9 389 73.3
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 3.7e-163 578.6 391 69.8
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 3.7e-163 578.6 391 70.6
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 1.1e-162 577.0 386 69.7
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 2.4e-162 575.9 386 69.9
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 7.0e-162 574.3 391 69.8
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 1.2e-161 573.5 391 70.1
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 7.7e-161 570.9 390 70.3
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 2.9e-160 568.9 391 69.1
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 2.9e-160 568.9 394 69.0
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 1.9e-159 566.2 392 68.1
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 9.4e-159 563.9 395 67.3
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 1.6e-158 563.1 393 67.7
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 2.1e-158 562.8 393 69.2
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 1.0e-157 560.5 392 66.6
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 1.4e-157 560.1 387 68.5
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.8e-157 559.7 394 68.3
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 1.8e-157 559.7 422 65.2
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 2.3e-157 559.3 395 66.6
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 3.0e-157 558.9 389 67.9
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 4.0e-157 558.5 389 67.4
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 4.0e-157 558.5 387 69.5
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 4.0e-157 558.5 387 69.5
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 5.2e-157 558.1 394 66.8
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 8.8e-157 557.4 393 66.9
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 1.2e-156 557.0 387 67.7
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 1.5e-156 556.6 394 66.5
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 2.0e-156 556.2 392 67.9
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 2.6e-156 555.8 393 66.2
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 4.4e-156 555.1 387 66.1
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 5.7e-156 554.7 392 68.9
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 7.5e-156 554.3 390 67.2
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 7.5e-156 554.3 389 68.1
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 7.5e-156 554.3 390 67.4
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 1.7e-155 553.1 393 65.9
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 4.8e-155 551.6 389 68.4
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 1.0e-152 543.9 391 65.7
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 1.3e-152 543.5 389 66.8
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 6.6e-152 541.2 394 64.0
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 5.5e-151 538.1 389 65.3
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 2.8e-150 535.8 393 65.4
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 6.1e-150 534.6 393 66.4
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 5.7e-148 528.1 390 65.6
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 5.7e-148 528.1 394 64.7
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 5.7e-148 528.1 390 64.4
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 9.8e-148 527.3 390 64.6
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 1.3e-147 526.9 443 58.5
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 2.4e-146 522.7 444 59.2
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 2.4e-146 522.7 396 63.1
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 2.4e-146 522.7 390 63.8
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 2.4e-146 522.7 394 64.0
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 5.4e-146 521.5 389 65.3
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 3.5e-145 518.8 376 66.2
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 4.5e-145 518.5 391 65.2
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 4.5e-145 518.5 397 65.0
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.3e-144 516.9 389 64.5
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 2.9e-144 515.8 379 64.6
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 3.9e-144 515.4 401 63.1
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 3.9e-144 515.4 341 70.1
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 1.9e-143 513.1 388 63.9
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 3.3e-143 512.3 396 62.6
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 3.3e-143 512.3 420 62.1
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 7.3e-143 511.1 393 63.6
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 7.3e-143 511.1 393 64.6
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 2.8e-142 509.2 392 64.5
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 6.1e-142 508.1 372 64.2
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 6.1e-142 508.1 337 70.0
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 5.2e-141 505.0 393 63.4
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.1e-138 497.3 387 64.1
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 4.1e-138 495.4 403 58.8
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 1.6e-137 493.4 391 61.1
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 3.5e-137 492.3 389 62.2
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 3.5e-137 492.3 395 62.3
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 3.9e-136 488.8 392 63.3
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 3.3e-135 485.7 377 63.4
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 1.1e-133 480.7 393 59.3
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 4.0e-133 478.8 390 62.3
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 5.2e-133 478.4 314 70.4
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 2.0e-132 476.5 391 59.3
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 1.3e-131 473.8 398 59.8
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.2e-131 473.0 302 72.2
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 1.9e-130 469.9 425 56.2
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 7.8e-129 464.5 412 57.5
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 3.0e-128 462.6 393 58.5
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 3.9e-128 462.2 390 60.5
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 3.3e-127 459.1 428 55.6
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 4.3e-127 458.8 384 59.9
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 4.3e-127 458.8 369 60.7
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 7.3e-127 458.0 395 57.2
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 7.3e-127 458.0 403 58.8
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 1.2e-126 457.2 390 60.0
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 3.6e-126 455.7 393 58.0
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 8.1e-126 454.5 394 57.9
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 8.1e-126 454.5 393 57.5
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 1.4e-125 453.8 385 59.2
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 8.9e-125 451.1 394 57.6
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 7.6e-124 448.0 389 58.4
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.1e-122 444.1 394 58.1
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 2.7e-121 439.5 383 56.4
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 8.6e-120 434.5 341 60.7
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 1.7e-99 367.1 269 66.2
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 2.2e-99 366.7 273 65.9
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 1.8e-96 357.1 234 73.1
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 1.2e-92 344.4 384 46.4
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 1.0e-91 341.3 381 45.9
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 1.3e-91 340.9 385 46.0
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 3.9e-88 329.3 349 48.7
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 8.2e-86 321.6 279 57.0
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 2.2e-78 297.0 259 59.5
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 9.0e-77 291.6 201 66.7
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 8.5e-75 285.0 298 47.7
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 4.7e-65 252.7 174 64.4
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 2.0e-63 247.3 318 44.0
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 2.4e-61 240.4 233 49.8
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 2.5e-58 230.3 171 67.8
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.8e-54 216.9 156 60.9
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 6.3e-54 215.7 349 37.2
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 5.5e-50 202.6 190 53.7
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 2.3e-40 170.6 139 62.6
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 1.6e-36 157.9 347 33.1
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 3.3e-34 150.2 124 61.3
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 4.7e-33 146.4 328 31.7
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 1.3e-27 128.3 149 45.0
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.6e-25 121.3 177 42.9
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 3.5e-20 103.6 171 36.3
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-14 83.6 157 34.4
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-12 77.8 69 46.4
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 6.2e-09 66.2 217 26.7
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 6.2e-09 66.2 217 26.7
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 1.8e-08 64.7 72 47.2
Prupe.8G259600 Prunus persica HOM05D005667 ORTHO05D007299 6.8e-08 62.8 46 71.7
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 7.6e-07 59.3 221 24.0
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 7.6e-07 59.3 221 24.0
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 7.6e-07 59.3 221 24.0
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 7.6e-07 59.3 221 24.0
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 7.6e-07 59.3 213 24.4
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 9.9e-07 58.9 221 24.0
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 9.9e-07 58.9 221 24.0
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 9.9e-07 58.9 221 24.0
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 1.7e-06 58.2 216 23.6
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 2.2e-06 57.8 221 24.0
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 2.9e-06 57.4 221 23.5
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 2.9e-06 57.4 221 23.5
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 4.9e-06 56.6 221 24.0
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 6.4e-06 56.2 174 25.3
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 8.4e-06 55.8 217 23.0
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 8.4e-06 55.8 217 24.0


User provided reference genes

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