Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 1.8e-34 148.7 75 100.0
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 2.6e-20 101.7 62 77.4
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.6e-17 92.4 69 60.9
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 3.6e-14 81.3 64 57.8
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 6.1e-14 80.5 55 63.6
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 8.0e-14 80.1 56 66.1
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 1.4e-13 79.3 62 61.3
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.8e-13 79.0 60 60.0
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.8e-13 79.0 60 63.3
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 2.3e-13 78.6 62 62.9
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 2.3e-13 78.6 60 63.3
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 3.0e-13 78.2 60 58.3
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 3.0e-13 78.2 53 67.9
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 3.0e-13 78.2 62 59.7
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 6.8e-13 77.0 56 62.5
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 6.8e-13 77.0 54 64.8
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 8.8e-13 76.6 56 62.5
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 8.8e-13 76.6 56 62.5
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 8.8e-13 76.6 56 62.5
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 8.8e-13 76.6 64 59.4
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 8.8e-13 76.6 60 63.3
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 8.8e-13 76.6 62 58.1
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 1.5e-12 75.9 61 62.3
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 2.0e-12 75.5 60 61.7
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 2.0e-12 75.5 62 54.8
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 2.0e-12 75.5 62 58.1
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 2.6e-12 75.1 63 57.1
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 2.6e-12 75.1 59 61.0
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 2.6e-12 75.1 59 61.0
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 2.6e-12 75.1 56 60.7
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 3.4e-12 74.7 57 63.2
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 3.4e-12 74.7 50 64.0
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 3.4e-12 74.7 65 56.9
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 4.4e-12 74.3 54 64.8
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 5.7e-12 73.9 54 61.1
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 5.7e-12 73.9 54 63.0
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 5.7e-12 73.9 54 63.0
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 5.7e-12 73.9 54 63.0
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 5.7e-12 73.9 65 58.5
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 5.7e-12 73.9 59 59.3
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 7.5e-12 73.6 64 57.8
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 1.3e-11 72.8 61 57.4
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 1.3e-11 72.8 48 68.8
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.7e-11 72.4 53 62.3
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 2.2e-11 72.0 60 58.3
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 2.2e-11 72.0 47 63.8
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 2.8e-11 71.6 56 66.1
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 3.7e-11 71.2 62 51.6
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 4.8e-11 70.9 64 57.8
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 4.8e-11 70.9 64 57.8
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 4.8e-11 70.9 64 57.8
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 4.8e-11 70.9 68 52.9
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 4.8e-11 70.9 68 52.9
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 6.3e-11 70.5 58 58.6
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 6.3e-11 70.5 62 56.5
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 6.3e-11 70.5 45 68.9
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 8.3e-11 70.1 55 58.2
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 1.4e-10 69.3 65 52.3
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 1.4e-10 69.3 65 56.9
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 1.4e-10 69.3 62 58.1
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.4e-10 69.3 62 58.1
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.4e-10 69.3 62 58.1
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.4e-10 69.3 62 58.1
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 2.4e-10 68.6 62 53.2
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 2.4e-10 68.6 56 53.6
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 3.1e-10 68.2 65 50.8
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 3.1e-10 68.2 45 64.4
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 3.1e-10 68.2 59 47.5
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.1e-10 68.2 62 56.5
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 3.1e-10 68.2 63 50.8
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 4.1e-10 67.8 46 67.4
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 4.1e-10 67.8 60 56.7
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 7.0e-10 67.0 61 57.4
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 9.1e-10 66.6 45 68.9
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 3.5e-09 64.7 77 46.8
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 3.5e-09 64.7 56 55.4
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 4.5e-09 64.3 60 51.7
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 7.7e-09 63.5 57 57.9
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 1.3e-08 62.8 57 57.9
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 1.3e-08 62.8 50 62.0
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 3.8e-08 61.2 34 76.5
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 6.5e-08 60.5 34 79.4
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 8.5e-08 60.1 56 53.6
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 3.2e-07 58.2 34 70.6
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 9.4e-07 56.6 55 50.9
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 2.1e-06 55.5 63 42.9


User provided reference genes

Program Settings