Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17773 Selenicereus undatus HOM05D007178 ORTHO05D009022 3.2e-50 201.4 102 100.0
CSS0006510 Camellia sinensis var. sinensis HOM05D007178 ORTHO05D009022 4.4e-23 111.3 74 70.3
TWI73G0655 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 3.7e-22 108.2 90 61.1
Ah.14g086320 Amaranthus hybridus HOM05D007178 ORTHO05D009022 6.3e-22 107.5 87 64.4
EL10Ac8g19636 Beta vulgaris HOM05D007178 ORTHO05D009022 8.3e-22 107.1 90 64.4
Sed0021444 Sechium edule HOM05D007178 ORTHO05D009022 8.3e-22 107.1 86 65.1
Sc05g0006030 Simmondsia chinensis HOM05D007178 ORTHO05D009022 1.8e-21 105.9 97 62.9
FvH4_3g05190 Fragaria vesca HOM05D007178 ORTHO05D009022 2.4e-21 105.5 92 62.0
FAN16G3072 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.4e-21 105.5 92 62.0
FAN21G4020 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.4e-21 105.5 92 62.0
FAN25G1793 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.4e-21 105.5 92 62.0
Duzib160G0207 Durio zibethinus HOM05D007178 ORTHO05D009022 3.1e-21 105.1 81 64.2
Duzib235G1408 Durio zibethinus HOM05D007178 ORTHO05D009022 4.1e-21 104.8 84 60.7
Gohir.A06G196500 Gossypium hirsutum HOM05D007178 ORTHO05D009022 9.2e-21 103.6 85 61.2
CiPaw.10G089700 Carya illinoinensis HOM05D007178 ORTHO05D009022 2.0e-20 102.4 103 55.3
Gohir.D06G204000 Gossypium hirsutum HOM05D007178 ORTHO05D009022 2.0e-20 102.4 89 60.7
CiPaw.09G121000 Carya illinoinensis HOM05D007178 ORTHO05D009022 2.7e-20 102.1 71 70.4
Cc00_g05770 Coffea canephora HOM05D007178 ORTHO05D009022 2.7e-20 102.1 88 61.4
vmacro03352 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 2.7e-20 102.1 96 61.5
Phvul.004G171100 Phaseolus vulgaris HOM05D007178 ORTHO05D009022 5.9e-20 100.9 87 64.4
RcHm_v2.0_Chr5g0014561 Rosa chinensis HOM05D007178 ORTHO05D009022 5.9e-20 100.9 78 66.7
Thecc.06G146700 Theobroma cacao HOM05D007178 ORTHO05D009022 7.8e-20 100.5 71 67.6
CANSAT35G0370 Cannabis sativa HOM05D007178 ORTHO05D009022 1.0e-19 100.1 70 70.0
GSVIVG01021533001 Vitis vinifera HOM05D007178 ORTHO05D009022 1.0e-19 100.1 97 59.8
TAR460G0007 Trochodendron aralioides HOM05D007178 ORTHO05D009022 1.3e-19 99.8 112 56.2
Aqoxy4G00077 Aquilegia oxysepala HOM05D007178 ORTHO05D009022 1.7e-19 99.4 74 67.6
MELO3C007115.2 Cucumis melo HOM05D007178 ORTHO05D009022 1.7e-19 99.4 100 56.0
Lj2g0013550 Lotus japonicus HOM05D007178 ORTHO05D009022 1.7e-19 99.4 89 59.6
TWI09G0402 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 1.7e-19 99.4 83 60.2
DCAR_027898 Daucus carota HOM05D007178 ORTHO05D009022 2.3e-19 99.0 73 67.1
Dinv32223 Davidia involucrata HOM05D007178 ORTHO05D009022 2.9e-19 98.6 65 75.4
unitig_26.g9766 Utricularia gibba HOM05D007178 ORTHO05D009022 3.8e-19 98.2 84 64.3
ECA234G3634 Erigeron canadensis HOM05D007178 ORTHO05D009022 5.0e-19 97.8 95 57.9
CsaV3_6G051920 Cucumis sativus L. HOM05D007178 ORTHO05D009022 8.6e-19 97.1 98 56.1
Glyma.01G003100 Glycine max HOM05D007178 ORTHO05D009022 8.6e-19 97.1 87 59.8
QL05p055487 Quercus lobata HOM05D007178 ORTHO05D009022 8.6e-19 97.1 71 66.2
Glyma.07G128900 Glycine max HOM05D007178 ORTHO05D009022 1.1e-18 96.7 89 58.4
THA.LOC104798400 Tarenaya hassleriana HOM05D007178 ORTHO05D009022 1.1e-18 96.7 102 56.9
ClCG01G024800 Citrullus lanatus HOM05D007178 ORTHO05D009022 1.5e-18 96.3 99 55.6
Dinv21533 Davidia involucrata HOM05D007178 ORTHO05D009022 1.5e-18 96.3 112 51.8
Gorai.010G238000 Gossypium raimondii HOM05D007178 ORTHO05D009022 1.5e-18 96.3 91 57.1
Peaxi162Scf00045g02430 Petunia axillaris HOM05D007178 ORTHO05D009022 1.5e-18 96.3 105 52.4
Manes.17G073200 Manihot esculenta HOM05D007178 ORTHO05D009022 1.9e-18 95.9 71 63.4
PSO675G4358 Papaver somniferum HOM05D007178 ORTHO05D009022 1.9e-18 95.9 71 67.6
Prupe.4G084100 Prunus persica HOM05D007178 ORTHO05D009022 2.5e-18 95.5 70 68.6
HPP92_014792 Vanilla planifolia HOM05D007178 ORTHO05D009022 3.3e-18 95.1 71 64.8
MD05G1280800 Malus domestica HOM05D007178 ORTHO05D009022 4.3e-18 94.7 70 67.1
PSO541G3638 Papaver somniferum HOM05D007178 ORTHO05D009022 4.3e-18 94.7 81 61.7
MBI18_g11238_MAGBIO Magnolia biondii HOM05D007178 ORTHO05D009022 7.3e-18 94.0 75 64.0
Nn3g20425 Nelumbo nucifera HOM05D007178 ORTHO05D009022 7.3e-18 94.0 78 64.1
Solyc08g022120.3 Solanum lycopersicum HOM05D007178 ORTHO05D009022 7.3e-18 94.0 100 54.0
Sopen08g007660 Solanum pennellii HOM05D007178 ORTHO05D009022 7.3e-18 94.0 100 54.0
TPR.G35503 Trifolium pratense HOM05D007178 ORTHO05D009022 7.3e-18 94.0 86 60.5
Cpa.g.sc17.33 Carica papaya HOM05D007178 ORTHO05D009022 9.5e-18 93.6 100 56.0
Migut.M00887 Erythranthe guttata HOM05D007178 ORTHO05D009022 9.5e-18 93.6 112 54.5
MD10G1259200 Malus domestica HOM05D007178 ORTHO05D009022 9.5e-18 93.6 69 66.7
Psat1g049440 Pisum sativum HOM05D007178 ORTHO05D009022 9.5e-18 93.6 86 61.6
Sp7g15630 Schrenkiella parvula HOM05D007178 ORTHO05D009022 9.5e-18 93.6 108 51.9
CARHR225220 Cardamine hirsuta HOM05D007178 ORTHO05D009022 1.2e-17 93.2 108 52.8
Ciclev10017932m.g Citrus clementina HOM05D007178 ORTHO05D009022 1.2e-17 93.2 81 60.5
Nitab4.5_0000315g0010 Nicotiana tabacum HOM05D007178 ORTHO05D009022 1.2e-17 93.2 113 51.3
Lsat_1_v5_gn_4_29580 Lactuca sativa HOM05D007178 ORTHO05D009022 1.6e-17 92.8 72 65.3
Cfa000915 Carpinus fangiana HOM05D007178 ORTHO05D009022 2.1e-17 92.4 104 52.9
Lalb_Chr22g0349731 Lupinus albus HOM05D007178 ORTHO05D009022 2.8e-17 92.0 99 52.5
Atru.chr10.1132 Acer truncatum HOM05D007178 ORTHO05D009022 4.7e-17 91.3 102 53.9
Gohir.A10G042700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 1.8e-16 89.4 84 58.3
Gohir.D10G043700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 1.8e-16 89.4 84 58.3
COL.COLO4_31031 Corchorus olitorius HOM05D007178 ORTHO05D009022 3.0e-16 88.6 66 63.6
Lalb_Chr14g0375331 Lupinus albus HOM05D007178 ORTHO05D009022 4.0e-16 88.2 74 59.5
AT4G18400 Arabidopsis thaliana HOM05D007178 ORTHO05D009022 5.2e-16 87.8 105 51.4
BolC1t01205H Brassica oleracea HOM05D007178 ORTHO05D009022 5.2e-16 87.8 102 52.9
CDE11G0374 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 8.9e-16 87.0 97 48.5
Potri.004G133260 Populus trichocarpa HOM05D007178 ORTHO05D009022 1.2e-15 86.7 83 53.0
arahy.Tifrunner.gnm1.ann1.KYL6KL Arachis hypogaea HOM05D007178 ORTHO05D009022 1.5e-15 86.3 94 56.4
Gorai.011G046500 Gossypium raimondii HOM05D007178 ORTHO05D009022 1.5e-15 86.3 98 53.1
Os09g0569450 Oryza sativa ssp. japonica HOM05D007178 ORTHO05D009022 2.0e-15 85.9 71 63.4
PGR083G2020 Punica granatum HOM05D007178 ORTHO05D009022 2.0e-15 85.9 102 50.0
FAN11G0307 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.6e-15 85.5 65 66.2
AL7G35950 Arabidopsis lyrata HOM05D007178 ORTHO05D009022 3.4e-15 85.1 106 51.9
vmacro05543 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 4.4e-15 84.7 78 59.0
Nitab4.5_0005655g0060 Nicotiana tabacum HOM05D007178 ORTHO05D009022 5.8e-15 84.3 117 47.9
A01p10340 Brassica napus HOM05D007178 ORTHO05D009022 7.5e-15 84.0 102 52.0
Carub.0007s2286 Capsella rubella HOM05D007178 ORTHO05D009022 7.5e-15 84.0 110 49.1
BraA01t00981Z Brassica rapa HOM05D007178 ORTHO05D009022 1.7e-14 82.8 102 52.0
BcaC06g30589 Brassica carinata HOM05D007178 ORTHO05D009022 2.9e-14 82.0 93 53.8
CDE05G0627 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 3.7e-14 81.6 104 46.2
Thhalv10026632m.g Eutrema salsugineum HOM05D007178 ORTHO05D009022 6.4e-14 80.9 105 49.5
VMungo0464G0906 Vigna mungo HOM05D007178 ORTHO05D009022 8.3e-14 80.5 60 71.7
BcaNung00005 Brassica carinata HOM05D007178 ORTHO05D009022 1.1e-13 80.1 109 49.5
A03p51260 Brassica napus HOM05D007178 ORTHO05D009022 1.1e-13 80.1 110 47.3
BraA03t14208Z Brassica rapa HOM05D007178 ORTHO05D009022 1.1e-13 80.1 110 47.3
FvH4_7g10051 Fragaria vesca HOM05D007178 ORTHO05D009022 2.4e-13 79.0 53 71.7
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 3.2e-13 78.6 64 65.6
SGA_v2.0_scaffold1G00199 Striga asiatica HOM05D007178 ORTHO05D009022 4.1e-13 78.2 64 62.5
Actinidia13672 Actinidia chinensis HOM05D007178 ORTHO05D009022 5.4e-13 77.8 44 84.1
BcaC09g51519 Brassica carinata HOM05D007178 ORTHO05D009022 1.2e-12 76.6 110 46.4
C01p12290 Brassica napus HOM05D007178 ORTHO05D009022 1.2e-12 76.6 110 46.4
Zm00001eb307790 Zea mays HOM05D007178 ORTHO05D009022 1.2e-12 76.6 71 53.5
HanXRQChr07g0199391 Helianthus annuus HOM05D007178 ORTHO05D009022 2.0e-12 75.9 44 79.5
ATR1098G109 Amborella trichopoda HOM05D007178 ORTHO05D009022 7.8e-12 73.9 44 77.3
Ah.13g071740 Amaranthus hybridus HOM05D007178 ORTHO05D009022 1.7e-11 72.8 53 71.7
Aa31LG6G1110 Aethionema arabicum HOM05D007178 ORTHO05D009022 3.9e-11 71.6 137 40.1
arahy.Tifrunner.gnm1.ann1.WWKL6Q Arachis hypogaea HOM05D007178 ORTHO05D009022 5.0e-11 71.2 66 60.6
Actinidia33661 Actinidia chinensis HOM05D007178 ORTHO05D009022 3.3e-10 68.6 73 53.4
FvH4_6g47640 Fragaria vesca HOM05D007178 ORTHO05D009022 3.3e-10 68.6 44 75.0
FAN14G2280 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.6e-09 66.2 42 73.8
FvH4_3g19851 Fragaria vesca HOM05D007178 ORTHO05D009022 2.8e-09 65.5 40 75.0
SEGI_20805 Sequoiadendron giganteum HOM05D019012 ORTHO05D020434 6.8e-08 60.8 58 50.0
FAN12G1070 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.5e-07 59.7 38 71.1
Gohir.D07G160820 Gossypium hirsutum HOM05D007178 ORTHO05D009022 4.9e-06 54.7 32 75.0


User provided reference genes

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