Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 0.0e+00 1894.0 912 100.0
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 0.0e+00 1264.2 912 68.9
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 4.9e-283 978.0 921 55.8
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 5.6e-271 937.9 910 54.5
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 5.1e-256 888.3 910 51.6
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 2.7e-220 769.6 921 43.3
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 5.2e-216 755.4 919 46.9
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 2.6e-215 753.1 871 46.6
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 5.7e-215 751.9 930 44.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 3.0e-208 729.6 939 43.9
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 4.0e-208 729.2 927 43.9
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 1.3e-206 724.2 950 43.4
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 1.9e-202 710.3 949 43.1
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 3.3e-202 709.5 929 42.2
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.2e-201 707.6 919 43.6
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 2.8e-201 706.4 811 46.7
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.8e-199 698.7 915 43.6
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 7.5e-199 698.4 936 42.6
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 9.8e-199 698.0 915 43.7
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 2.2e-198 696.8 924 40.3
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 8.3e-198 694.9 928 40.8
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.1e-197 694.5 942 43.0
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 2.7e-196 689.9 934 42.2
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 6.0e-196 688.7 921 41.0
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 7.8e-196 688.3 921 41.0
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.7e-195 687.2 926 41.5
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.7e-195 687.2 921 41.2
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.7e-195 687.2 913 42.2
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.5e-194 684.1 920 41.0
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 1.2e-193 681.0 934 41.6
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-189 667.9 911 42.8
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 6.6e-187 658.7 871 42.7
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 1.5e-183 647.5 911 41.5
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 3.4e-183 646.4 911 41.9
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 9.9e-183 644.8 818 44.0
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 1.4e-181 641.0 784 43.6
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 7.1e-181 638.6 919 42.0
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.6e-180 636.0 922 41.4
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 8.6e-179 631.7 927 41.0
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 1.6e-177 627.5 925 40.3
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 3.6e-177 626.3 914 41.1
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 4.0e-176 622.9 920 39.3
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 4.4e-175 619.4 923 40.0
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 7.6e-175 618.6 919 39.7
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 1.3e-174 617.8 910 40.1
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 6.4e-174 615.5 904 40.3
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 1.4e-173 614.4 897 41.4
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 2.4e-173 613.6 914 40.0
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 3.5e-172 609.8 923 40.1
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 6.0e-172 609.0 904 40.0
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 1.1e-170 604.7 915 40.0
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.5e-170 604.4 915 40.9
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.8e-169 600.1 931 38.6
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.7e-166 590.9 924 39.1
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.9e-166 590.1 725 44.3
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 2.7e-164 583.6 911 39.6
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.3e-163 581.3 960 38.2
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 2.3e-163 580.5 938 39.0
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 2.3e-163 580.5 917 38.8
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 8.7e-163 578.6 932 38.2
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.9e-158 562.8 932 38.7
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 2.4e-157 560.5 903 37.9
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.3e-154 549.7 838 40.6
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 8.1e-153 545.4 776 40.5
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 3.1e-152 543.5 956 37.3
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.4e-149 534.6 946 35.7
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 5.1e-147 526.2 927 36.7
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 6.7e-147 525.8 870 37.4
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 4.3e-146 523.1 944 36.9
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 5.0e-142 509.6 805 39.6
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.9e-141 507.7 923 37.3
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 4.2e-141 506.5 889 36.9
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.6e-140 504.6 940 36.8
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 5.1e-139 499.6 945 35.9
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 9.7e-138 495.4 943 35.7
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 7.7e-135 485.7 742 40.3
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 5.0e-134 483.0 910 35.4
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 3.2e-133 480.3 960 34.2
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.1e-132 477.6 886 35.9
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 6.1e-132 476.1 906 34.4
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 1.8e-128 464.5 889 35.1
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 2.4e-128 464.2 914 34.9
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.7e-126 458.0 887 34.8
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 2.9e-126 457.2 888 34.0
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.4e-125 454.9 846 35.8
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 2.5e-125 454.1 869 34.8
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 3.6e-124 450.3 870 34.7
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.8e-123 448.0 890 34.6
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 3.9e-123 446.8 896 34.2
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 1.1e-122 445.3 870 34.4
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 2.0e-114 417.9 899 33.1
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 1.6e-111 408.3 401 51.1
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.1e-109 402.1 768 32.7
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 9.4e-109 399.1 930 32.5
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 3.4e-106 390.6 537 43.8
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-100 372.1 952 31.8
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 1.4e-99 368.6 918 30.0
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 5.2e-99 366.7 945 32.3
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.0e-94 352.4 668 36.2
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 4.7e-92 343.6 857 30.8
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 2.3e-91 341.3 576 35.4
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.2e-88 330.9 474 40.1
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 7.0e-88 329.7 945 30.6
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.1e-83 314.3 669 34.5
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 7.5e-82 309.7 938 29.2
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 1.0e-78 299.3 679 33.0
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 3.3e-77 294.3 957 27.6
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 2.1e-76 291.6 479 38.2
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 4.4e-66 257.3 654 30.6
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 1.0e-62 246.1 493 34.1
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.6e-61 239.6 785 29.0
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 9.3e-56 223.0 527 31.1
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 9.3e-56 223.0 356 37.9
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.6e-52 212.2 450 34.0
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.1e-48 199.5 687 27.4
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 7.1e-48 196.8 457 33.5
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 7.1e-48 196.8 196 44.9
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 1.2e-47 196.1 353 36.5
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.8e-46 192.2 416 34.4
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 4.5e-42 177.6 488 31.4
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 5.8e-42 177.2 177 46.9
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.0e-33 149.8 511 25.4
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 4.2e-32 144.4 289 35.3
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 1.6e-31 142.5 184 50.0
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.3e-30 139.4 518 26.6
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 8.7e-30 136.7 306 32.7
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 8.7e-30 136.7 306 32.7
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.7e-29 134.0 518 27.2
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 5.7e-29 134.0 147 43.5
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 9.7e-29 133.3 479 25.9
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.6e-28 132.5 147 42.9
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.1e-27 129.8 314 29.9
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 2.4e-27 128.6 342 29.5
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 5.5e-24 117.5 212 35.4
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 7.2e-24 117.1 247 33.6
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 2.5e-21 108.6 164 38.4
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 4.5e-18 97.8 423 24.6
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.5e-17 94.0 387 27.1
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.5e-16 90.9 381 26.5
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.0e-14 86.7 156 37.8
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.4e-14 86.3 241 33.6
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 1.4e-14 86.3 140 35.0
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.8e-12 78.6 210 30.5
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 4.8e-12 77.8 130 31.5
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 2.0e-10 72.4 414 24.2
BcaB06g25877 Brassica carinata HOM05D004345 ORTHO05D005192 4.7e-07 61.2 59 49.2
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 1.0e-06 60.1 141 32.6


User provided reference genes

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