Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 2.7e-112 408.7 208 100.0
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.2e-69 266.2 214 67.8
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.4e-68 262.7 213 66.7
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 5.5e-65 251.5 206 65.0
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 2.8e-64 249.2 203 65.5
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 2.3e-63 246.1 207 61.8
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 1.2e-62 243.8 206 64.6
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 2.6e-62 242.7 202 61.4
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 4.4e-62 241.9 203 67.0
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 1.3e-61 240.4 211 62.6
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.8e-61 239.2 208 61.1
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 2.8e-61 239.2 208 61.1
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 6.3e-61 238.0 202 60.9
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 8.3e-61 237.7 207 63.3
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 1.4e-60 236.9 244 58.6
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 1.4e-60 236.9 204 61.8
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.8e-60 236.5 208 60.1
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 2.4e-60 236.1 205 62.4
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 3.1e-60 235.7 223 57.8
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 5.4e-60 235.0 202 61.4
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 1.2e-59 233.8 211 61.1
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 3.5e-59 232.3 203 63.1
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 3.5e-59 232.3 207 60.4
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 5.9e-59 231.5 203 58.6
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.7e-58 229.9 210 59.0
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 2.9e-58 229.2 218 58.7
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 2.9e-58 229.2 209 57.9
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 1.1e-57 227.3 216 58.8
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 1.5e-57 226.9 207 59.9
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 3.3e-57 225.7 212 59.0
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 4.3e-57 225.3 228 57.9
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 5.6e-57 224.9 213 57.3
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 9.5e-57 224.2 209 62.2
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 1.2e-56 223.8 243 52.3
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 3.6e-56 222.2 208 62.5
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 4.7e-56 221.9 212 57.5
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 8.0e-56 221.1 217 57.1
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 1.0e-55 220.7 202 60.4
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 1.0e-55 220.7 207 58.9
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 1.4e-55 220.3 204 58.8
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 2.3e-55 219.5 193 63.7
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 3.1e-55 219.2 152 75.0
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 5.2e-55 218.4 213 55.4
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 6.8e-55 218.0 213 55.9
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 8.9e-55 217.6 208 57.7
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 1.2e-54 217.2 139 75.5
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.5e-54 216.9 213 55.9
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 2.0e-54 216.5 221 58.4
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 2.0e-54 216.5 209 59.8
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 2.0e-54 216.5 209 59.8
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 9.8e-54 214.2 202 56.4
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 1.3e-53 213.8 202 59.9
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 1.3e-53 213.8 210 57.6
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 3.7e-53 212.2 210 55.2
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 4.9e-53 211.8 208 56.7
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 8.3e-53 211.1 202 55.0
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.4e-52 210.3 203 55.2
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 1.9e-52 209.9 206 55.3
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 4.1e-52 208.8 216 55.6
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 5.4e-52 208.4 225 52.0
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 7.0e-52 208.0 202 55.9
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 7.0e-52 208.0 204 54.9
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 9.2e-52 207.6 212 53.8
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 2.0e-51 206.5 176 63.1
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 2.7e-51 206.1 214 53.3
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 6.0e-51 204.9 232 51.7
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.0e-50 204.1 225 52.4
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 1.3e-50 203.8 213 54.0
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 8.6e-50 201.1 234 52.1
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.1e-49 200.7 278 48.9
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.5e-49 200.3 207 55.6
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 1.9e-49 199.9 214 54.2
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 1.9e-49 199.9 204 54.4
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 1.2e-48 197.2 203 51.7
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 6.8e-47 191.4 200 52.0
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.2e-46 190.7 213 51.6
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.5e-46 190.3 203 52.7
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.5e-46 190.3 203 52.7
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 2.0e-46 189.9 200 52.5
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 9.8e-46 187.6 125 75.2
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 9.8e-46 187.6 200 52.5
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.2e-45 186.4 196 56.1
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 1.1e-44 184.1 231 48.5
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 4.1e-44 182.2 204 52.5
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 7.0e-44 181.4 208 50.5
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 4.6e-43 178.7 203 50.7
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 3.9e-42 175.6 200 52.0
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 6.6e-42 174.9 202 52.0
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 2.5e-41 172.9 208 48.6
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 7.3e-41 171.4 209 47.8
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 3.1e-39 166.0 207 49.8
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 2.6e-38 162.9 201 46.8
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 1.3e-34 150.6 108 64.8
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 1.2e-32 144.1 204 45.1
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 1.4e-31 140.6 144 57.6
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 1.3e-29 134.0 124 60.5
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 2.3e-26 123.2 78 75.6
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 5.1e-26 122.1 209 41.6
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 1.1e-25 120.9 127 55.9
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.8e-23 113.6 139 49.6
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 4.0e-23 112.5 200 39.0
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.8e-22 108.6 132 49.2
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 1.7e-21 107.1 145 42.1
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 4.9e-21 105.5 69 71.0
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 5.3e-15 85.5 131 38.9
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 5.3e-15 85.5 78 50.0
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 3.4e-14 82.8 78 50.0
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 7.6e-14 81.6 55 72.7
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.6e-11 72.4 47 70.2
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 1.2e-06 57.8 122 30.3
Nitab4.5_0000421g0070 Nicotiana tabacum HOM05D000868 ORTHO05D000711 2.0e-06 57.0 121 28.9
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 2.0e-06 57.0 101 31.7
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 2.6e-06 56.6 123 29.3
Sp2g01900 Schrenkiella parvula HOM05D002462 ORTHO05D002893 3.4e-06 56.2 131 26.7
C02p42670 Brassica napus HOM05D005920 ORTHO05D007211 5.8e-06 55.5 141 27.7
Cc10_g07370 Coffea canephora HOM05D000868 ORTHO05D000711 5.8e-06 55.5 102 32.4
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 5.8e-06 55.5 165 27.9
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 5.8e-06 55.5 165 27.9
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.6e-06 55.1 92 40.2
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 7.6e-06 55.1 133 28.6
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 7.6e-06 55.1 123 29.3
BcaC03g16447 Brassica carinata HOM05D005920 ORTHO05D007211 9.9e-06 54.7 153 26.8
BolSC33t60638H Brassica oleracea HOM05D005920 ORTHO05D007211 9.9e-06 54.7 151 27.2
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 9.9e-06 54.7 136 26.5


User provided reference genes

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