Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17314 Selenicereus undatus HOM05D001065 ORTHO05D002020 7.9e-43 176.8 95 100.0
FvH4_2g27500 Fragaria vesca HOM05D001065 ORTHO05D002020 2.6e-17 92.0 72 73.6
FAN15G3219 Fragaria x ananassa HOM05D001065 ORTHO05D002020 2.6e-17 92.0 72 73.6
FAN24G0753 Fragaria x ananassa HOM05D001065 ORTHO05D002020 2.6e-17 92.0 72 73.6
FAN27G1699 Fragaria x ananassa HOM05D001065 ORTHO05D002020 9.8e-17 90.1 72 72.2
EL10Ac1g00003 Beta vulgaris HOM05D001065 ORTHO05D002020 1.7e-16 89.4 81 66.7
MD00G1030000 Malus domestica HOM05D001065 ORTHO05D002020 2.8e-16 88.6 70 72.9
RcHm_v2.0_Chr6g0296331 Rosa chinensis HOM05D001065 ORTHO05D002020 2.8e-16 88.6 70 72.9
GSVIVG01008831001 Vitis vinifera HOM05D001065 ORTHO05D002020 2.8e-16 88.6 73 69.9
COL.COLO4_07483 Corchorus olitorius HOM05D001065 ORTHO05D002020 3.7e-16 88.2 70 72.9
CSS0047329 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 8.3e-16 87.0 73 69.9
Thecc.08G129700 Theobroma cacao HOM05D001065 ORTHO05D002020 1.1e-15 86.7 66 75.8
Atru.chr13.1528 Acer truncatum HOM05D001065 ORTHO05D002020 1.8e-15 85.9 73 69.9
Prupe.1G492600 Prunus persica HOM05D001065 ORTHO05D002020 2.4e-15 85.5 70 71.4
Manes.02G166500 Manihot esculenta HOM05D001065 ORTHO05D002020 7.0e-15 84.0 73 69.9
Actinidia21301 Actinidia chinensis HOM05D001065 ORTHO05D002020 1.2e-14 83.2 73 65.8
TAR376G1110 Trochodendron aralioides HOM05D001065 ORTHO05D002020 1.2e-14 83.2 68 70.6
Gohir.D02G079200 Gossypium hirsutum HOM05D001065 ORTHO05D002020 1.6e-14 82.8 63 74.6
Gorai.005G088500 Gossypium raimondii HOM05D001065 ORTHO05D002020 1.6e-14 82.8 63 74.6
vmacro12615 Vaccinium macrocarpon HOM05D001065 ORTHO05D002020 2.0e-14 82.4 73 67.1
Hma1.2p1_0542F.1_g174940 Hydrangea macrophylla HOM05D001065 ORTHO05D002020 3.5e-14 81.6 75 66.7
MD00G1041900 Malus domestica HOM05D001065 ORTHO05D002020 4.5e-14 81.3 70 68.6
Actinidia15228 Actinidia chinensis HOM05D001065 ORTHO05D002020 5.9e-14 80.9 73 65.8
Duzib116G0856 Durio zibethinus HOM05D001065 ORTHO05D002020 5.9e-14 80.9 68 69.1
Aqoxy6G00265 Aquilegia oxysepala HOM05D001065 ORTHO05D002020 7.7e-14 80.5 68 69.1
Sc15g0003000 Simmondsia chinensis HOM05D001065 ORTHO05D002020 7.7e-14 80.5 81 67.9
Gohir.A02G071900 Gossypium hirsutum HOM05D001065 ORTHO05D002020 1.0e-13 80.1 63 73.0
QL09p033728 Quercus lobata HOM05D001065 ORTHO05D002020 1.0e-13 80.1 73 65.8
Duzib041G0679 Durio zibethinus HOM05D001065 ORTHO05D002020 1.3e-13 79.7 68 70.6
Cc10_g12300 Coffea canephora HOM05D001065 ORTHO05D002020 2.9e-13 78.6 82 59.8
Dinv14648 Davidia involucrata HOM05D001065 ORTHO05D002020 2.9e-13 78.6 68 66.2
CSS0034416 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 3.8e-13 78.2 73 63.0
CSS0037838 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 3.8e-13 78.2 73 63.0
Ciclev10000405m.g Citrus clementina HOM05D001065 ORTHO05D002020 3.8e-13 78.2 74 63.5
Potri.002G080600 Populus trichocarpa HOM05D001065 ORTHO05D002020 3.8e-13 78.2 73 67.1
TAR628G1385 Trochodendron aralioides HOM05D001065 ORTHO05D002020 6.5e-13 77.4 68 67.6
Cfa018563 Carpinus fangiana HOM05D001065 ORTHO05D002020 1.1e-12 76.6 70 64.3
Sabra05G0136800 Salix brachista HOM05D001065 ORTHO05D002020 1.1e-12 76.6 81 61.7
Dinv27281 Davidia involucrata HOM05D001065 ORTHO05D002020 1.5e-12 76.3 73 61.6
MBI06_g35523_MAGBIO Magnolia biondii HOM05D001065 ORTHO05D002020 1.9e-12 75.9 73 63.0
CSS0004246 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 3.2e-12 75.1 73 65.8
AUR62043124 Chenopodium quinoa HOM05D001065 ORTHO05D002020 3.2e-12 75.1 81 59.3
Nitab4.5_0000322g0040 Nicotiana tabacum HOM05D001065 ORTHO05D002020 4.2e-12 74.7 70 62.9
Potri.005G180800 Populus trichocarpa HOM05D001065 ORTHO05D002020 4.2e-12 74.7 73 65.8
CiPaw.15G034000 Carya illinoinensis HOM05D001065 ORTHO05D002020 5.5e-12 74.3 73 64.4
CANSAT25G2087 Cannabis sativa HOM05D001065 ORTHO05D002020 7.2e-12 73.9 78 61.5
Gohir.D05G271100 Gossypium hirsutum HOM05D001065 ORTHO05D002020 7.2e-12 73.9 68 69.1
Gorai.009G284000 Gossypium raimondii HOM05D001065 ORTHO05D002020 7.2e-12 73.9 68 69.1
Haze_17517 Corylus avellana HOM05D001065 ORTHO05D002020 9.5e-12 73.6 72 63.9
Gohir.A05G269200 Gossypium hirsutum HOM05D001065 ORTHO05D002020 9.5e-12 73.6 58 70.7
Peaxi162Scf00051g01715 Petunia axillaris HOM05D001065 ORTHO05D002020 1.2e-11 73.2 67 62.7
Rhsim06G0088100 Rhododendron simsii HOM05D001065 ORTHO05D002020 1.2e-11 73.2 73 63.0
PSO528G0199 Papaver somniferum HOM05D001065 ORTHO05D002020 1.6e-11 72.8 65 69.2
Lj7C345G4 Lonicera japonica HOM05D001065 ORTHO05D002020 2.1e-11 72.4 70 67.1
Nn5g28410 Nelumbo nucifera HOM05D001065 ORTHO05D002020 2.1e-11 72.4 82 57.3
Gohir.D06G123350 Gossypium hirsutum HOM05D001065 ORTHO05D002020 2.8e-11 72.0 68 67.6
PSO170G0954 Papaver somniferum HOM05D001065 ORTHO05D002020 2.8e-11 72.0 63 69.8
MSTRG.22404 Avicennia marina HOM05D001065 ORTHO05D002020 3.6e-11 71.6 48 79.2
ECA246G4266 Erigeron canadensis HOM05D001065 ORTHO05D002020 3.6e-11 71.6 73 54.8
Solyc06g060120.3 Solanum lycopersicum HOM05D001065 ORTHO05D002020 3.6e-11 71.6 67 59.7
Glyma.04G247200 Glycine max HOM05D001065 ORTHO05D002020 4.7e-11 71.2 79 57.0
TWI34G1002 Tripterygium wilfordii HOM05D001065 ORTHO05D002020 4.7e-11 71.2 70 60.0
Glyma.06G115600 Glycine max HOM05D001065 ORTHO05D002020 6.1e-11 70.9 78 53.8
Lj4A641G45 Lonicera japonica HOM05D001065 ORTHO05D002020 6.1e-11 70.9 70 64.3
Lj4A642G41 Lonicera japonica HOM05D001065 ORTHO05D002020 6.1e-11 70.9 70 64.3
HanXRQChr05g0149021 Helianthus annuus HOM05D001065 ORTHO05D002020 8.0e-11 70.5 73 57.5
Nitab4.5_0009546g0010 Nicotiana tabacum HOM05D001065 ORTHO05D002020 8.0e-11 70.5 70 60.0
AUR62020263 Chenopodium quinoa HOM05D001065 ORTHO05D002020 1.0e-10 70.1 47 80.9
Sopen06g020240 Solanum pennellii HOM05D001065 ORTHO05D002020 1.0e-10 70.1 67 58.2
TWI60G0950 Tripterygium wilfordii HOM05D001065 ORTHO05D002020 1.0e-10 70.1 70 61.4
VMungo1309G1139 Vigna mungo HOM05D001065 ORTHO05D002020 1.4e-10 69.7 68 58.8
Lalb_Chr08g0241261 Lupinus albus HOM05D001065 ORTHO05D002020 1.8e-10 69.3 78 56.4
Medtr3g088480 Medicago truncatula HOM05D001065 ORTHO05D002020 1.8e-10 69.3 44 81.8
THA.LOC104800230 Tarenaya hassleriana HOM05D001065 ORTHO05D002020 1.8e-10 69.3 66 59.1
TPR.G13468 Trifolium pratense HOM05D001065 ORTHO05D002020 1.8e-10 69.3 44 81.8
Lj1g0001950 Lotus japonicus HOM05D001065 ORTHO05D002020 2.3e-10 68.9 79 54.4
Oeu032209.1 Olea europaea HOM05D001065 ORTHO05D002020 2.3e-10 68.9 48 75.0
Phvul.009G127700 Phaseolus vulgaris HOM05D001065 ORTHO05D002020 2.3e-10 68.9 73 56.2
Sed0006418 Sechium edule HOM05D001065 ORTHO05D002020 2.3e-10 68.9 73 58.9
A08p28850 Brassica napus HOM05D001065 ORTHO05D002020 3.0e-10 68.6 75 53.3
BraA08t34815Z Brassica rapa HOM05D001065 ORTHO05D002020 3.0e-10 68.6 75 53.3
ClCG11G015890 Citrullus lanatus HOM05D001065 ORTHO05D002020 3.0e-10 68.6 87 52.9
Nn1g08891 Nelumbo nucifera HOM05D001065 ORTHO05D002020 3.0e-10 68.6 68 58.8
MELO3C010503.2 Cucumis melo HOM05D001065 ORTHO05D002020 4.0e-10 68.2 73 60.3
AL1G34870 Arabidopsis lyrata HOM05D001065 ORTHO05D002020 5.2e-10 67.8 68 55.9
CsaV3_4G028080 Cucumis sativus L. HOM05D001065 ORTHO05D002020 5.2e-10 67.8 73 58.9
CsaV3_UNG115960 Cucumis sativus L. HOM05D001065 ORTHO05D002020 5.2e-10 67.8 73 58.9
Oeu001540.1 Olea europaea HOM05D001065 ORTHO05D002020 5.2e-10 67.8 47 74.5
Sabra02G0063100 Salix brachista HOM05D001065 ORTHO05D002020 5.2e-10 67.8 73 64.4
CAN.G1282.7 Capsicum annuum HOM05D001065 ORTHO05D002020 6.8e-10 67.4 70 58.6
CARHR022060 Cardamine hirsuta HOM05D001065 ORTHO05D002020 6.8e-10 67.4 68 57.4
SGA_v2.0_scaffold24G10435 Striga asiatica HOM05D001065 ORTHO05D002020 6.8e-10 67.4 47 74.5
Aa31LG7G5670 Aethionema arabicum HOM05D001065 ORTHO05D002020 8.8e-10 67.0 53 66.0
BcaC07g39112 Brassica carinata HOM05D001065 ORTHO05D002020 8.8e-10 67.0 75 52.0
BolC8t49738H Brassica oleracea HOM05D001065 ORTHO05D002020 8.8e-10 67.0 75 52.0
Sed0027165 Sechium edule HOM05D001065 ORTHO05D002020 8.8e-10 67.0 52 71.2
arahy.Tifrunner.gnm1.ann1.8ZSB7P Arachis hypogaea HOM05D001065 ORTHO05D002020 1.2e-09 66.6 73 54.8
arahy.Tifrunner.gnm1.ann1.D2JSQE Arachis hypogaea HOM05D001065 ORTHO05D002020 1.2e-09 66.6 73 54.8
Ca_16578_v3 Cicer arietinum L. HOM05D001065 ORTHO05D002020 1.2e-09 66.6 73 57.5
Eucgr.F03812 Eucalyptus grandis HOM05D001065 ORTHO05D002020 1.2e-09 66.6 52 71.2
Sp1g19260 Schrenkiella parvula HOM05D001065 ORTHO05D002020 1.2e-09 66.6 63 60.3
unitig_22.g6738 Utricularia gibba HOM05D001065 ORTHO05D002020 1.5e-09 66.2 40 85.0
unitig_8.g3348 Utricularia gibba HOM05D001065 ORTHO05D002020 1.5e-09 66.2 48 72.9
Thhalv10006819m.g Eutrema salsugineum HOM05D001065 ORTHO05D002020 2.0e-09 65.9 68 54.4
Oeu040406.1 Olea europaea HOM05D001065 ORTHO05D002020 2.0e-09 65.9 48 72.9
PGR042G2649 Punica granatum HOM05D001065 ORTHO05D002020 2.0e-09 65.9 48 75.0
SalBow2G1254 Salvia bowleyana HOM05D001065 ORTHO05D002020 2.0e-09 65.9 48 77.1
Carub.0001s2114 Capsella rubella HOM05D001065 ORTHO05D002020 2.6e-09 65.5 81 49.4
Glyma.13G031300 Glycine max HOM05D001065 ORTHO05D002020 2.6e-09 65.5 73 53.4
Lalb_Chr11g0066081 Lupinus albus HOM05D001065 ORTHO05D002020 2.6e-09 65.5 44 72.7
VMungo0647G1964 Vigna mungo HOM05D001065 ORTHO05D002020 2.6e-09 65.5 80 52.5
C08p21010 Brassica napus HOM05D001065 ORTHO05D002020 3.4e-09 65.1 75 50.7
BcaB07g32167 Brassica carinata HOM05D001065 ORTHO05D002020 4.4e-09 64.7 49 71.4
Cpa.g.sc64.127 Carica papaya HOM05D001065 ORTHO05D002020 4.4e-09 64.7 40 82.5
SGA_v2.0_scaffold28G11985 Striga asiatica HOM05D001065 ORTHO05D002020 4.4e-09 64.7 47 72.3
BolC5t30767H Brassica oleracea HOM05D001065 ORTHO05D002020 5.7e-09 64.3 49 71.4
BraA06t24871Z Brassica rapa HOM05D001065 ORTHO05D002020 5.7e-09 64.3 49 71.4
AT1G21700 Arabidopsis thaliana HOM05D001065 ORTHO05D002020 7.5e-09 63.9 66 53.0
SGA_v2.0_scaffold154G37194 Striga asiatica HOM05D001065 ORTHO05D002020 7.5e-09 63.9 47 72.3
C05p20680 Brassica napus HOM05D001065 ORTHO05D002020 9.8e-09 63.5 73 50.7
BcaC05g26089 Brassica carinata HOM05D001065 ORTHO05D002020 1.3e-08 63.2 73 50.7
A06p17790 Brassica napus HOM05D001065 ORTHO05D002020 1.3e-08 63.2 73 50.7
Phvul.001G071900 Phaseolus vulgaris HOM05D001065 ORTHO05D002020 1.7e-08 62.8 80 51.2
SEGI_34221 Sequoiadendron giganteum HOM05D001065 ORTHO05D002020 2.2e-08 62.4 49 65.3
HPP92_009276 Vanilla planifolia HOM05D001065 ORTHO05D002020 2.8e-08 62.0 59 61.0
Glyma.14G153000 Glycine max HOM05D001065 ORTHO05D002020 3.7e-08 61.6 73 52.1
Lsat_1_v5_gn_6_97621 Lactuca sativa HOM05D001065 ORTHO05D002020 3.7e-08 61.6 79 53.2
SGA_v2.0_scaffold154G37173 Striga asiatica HOM05D001065 ORTHO05D002020 3.7e-08 61.6 47 70.2
CDE06G1933 Ceratophyllum demersum HOM05D001065 ORTHO05D002020 4.9e-08 61.2 66 57.6
Manes.18G080000 Manihot esculenta HOM05D001065 ORTHO05D002020 4.9e-08 61.2 40 77.5
ATR0994G009 Amborella trichopoda HOM05D001065 ORTHO05D002020 6.3e-08 60.8 70 52.9
Zm00001eb138850 Zea mays HOM05D001065 ORTHO05D002020 6.3e-08 60.8 74 52.7
DCAR_003565 Daucus carota HOM05D001065 ORTHO05D002020 1.1e-07 60.1 68 50.0
CDE08G0267 Ceratophyllum demersum HOM05D001065 ORTHO05D002020 2.4e-07 58.9 45 71.1
Os11g0183700 Oryza sativa ssp. japonica HOM05D001065 ORTHO05D002020 3.1e-07 58.5 50 68.0
Os12g0176700 Oryza sativa ssp. japonica HOM05D001065 ORTHO05D002020 7.0e-07 57.4 53 66.0
Zm00001eb201260 Zea mays HOM05D001065 ORTHO05D002020 2.0e-06 55.8 38 73.7


User provided reference genes

Program Settings