Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.0e-128 461.5 235 100.0
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.9e-117 426.0 226 93.8
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 2.9e-86 322.4 226 70.8
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.1e-85 320.5 225 69.8
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.1e-85 320.5 228 71.5
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 4.2e-85 318.5 223 70.4
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 9.3e-85 317.4 223 69.5
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 6.0e-84 314.7 220 68.6
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.8e-83 313.2 223 69.1
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.3e-83 312.8 225 68.9
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 2.3e-83 312.8 222 68.0
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 2.3e-83 312.8 224 68.3
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 5.1e-83 311.6 226 68.1
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 6.7e-83 311.2 223 66.8
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 1.5e-82 310.1 223 68.6
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 1.5e-82 310.1 225 69.3
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.5e-82 310.1 224 67.4
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 5.6e-82 308.1 224 67.0
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.6e-81 306.6 225 66.7
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.6e-81 306.6 227 67.8
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.1e-81 306.2 222 65.8
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.8e-81 305.8 227 67.4
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.8e-81 305.8 222 66.2
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 3.7e-81 305.4 228 65.8
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 3.7e-81 305.4 216 68.1
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 3.7e-81 305.4 226 68.1
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.8e-81 305.1 227 67.4
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.8e-81 305.1 227 67.4
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 6.2e-81 304.7 218 68.3
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.1e-80 303.9 223 65.0
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.1e-80 303.9 212 70.3
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.4e-80 303.5 226 65.0
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.8e-80 303.1 220 68.6
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 2.4e-80 302.8 222 64.4
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 2.4e-80 302.8 225 67.1
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 3.1e-80 302.4 225 67.1
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 3.1e-80 302.4 222 66.7
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 4.0e-80 302.0 232 62.9
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 5.3e-80 301.6 217 68.2
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 5.3e-80 301.6 216 67.1
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.2e-79 300.4 222 66.7
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.2e-79 300.4 213 69.5
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.5e-79 300.1 224 66.1
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 2.0e-79 299.7 218 67.9
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 2.0e-79 299.7 225 66.2
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.6e-79 299.3 231 65.8
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 4.5e-79 298.5 224 66.1
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 5.8e-79 298.1 225 65.3
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.3e-78 297.0 224 65.2
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.3e-78 297.0 217 67.7
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 1.7e-78 296.6 223 64.1
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 2.2e-78 296.2 222 66.7
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 2.2e-78 296.2 217 65.0
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.9e-78 295.8 225 64.0
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.8e-78 295.4 231 61.5
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 8.4e-78 294.3 224 65.2
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.4e-77 293.5 216 63.9
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 2.5e-77 292.7 227 63.4
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.2e-77 292.4 217 66.8
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 5.5e-77 291.6 226 62.8
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 7.1e-77 291.2 227 63.9
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 7.1e-77 291.2 222 62.6
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 7.1e-77 291.2 227 61.7
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 9.3e-77 290.8 227 64.3
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 1.2e-76 290.4 224 63.4
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.2e-76 290.4 224 63.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.1e-76 289.7 227 62.6
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 2.1e-76 289.7 217 64.5
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.7e-76 289.3 227 63.0
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 2.7e-76 289.3 226 60.2
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 7.9e-76 287.7 213 67.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.0e-75 287.3 226 61.9
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.0e-75 287.3 217 64.1
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.3e-75 287.0 227 61.2
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.8e-75 286.6 220 64.5
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.8e-75 286.6 220 64.5
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.8e-75 286.6 284 55.3
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 6.7e-75 284.6 219 64.4
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 8.7e-75 284.3 227 61.2
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 2.5e-74 282.7 223 64.1
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 3.3e-74 282.3 220 63.2
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.6e-73 280.0 221 61.1
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 4.8e-73 278.5 221 59.7
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 4.8e-73 278.5 221 59.7
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 4.8e-73 278.5 221 59.7
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 4.8e-73 278.5 195 70.8
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.1e-72 277.3 202 66.3
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.8e-72 276.6 217 64.1
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.4e-72 276.2 217 63.1
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 2.4e-72 276.2 253 55.7
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 4.1e-72 275.4 221 58.8
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 4.1e-72 275.4 221 58.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 9.0e-72 274.2 228 59.2
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.5e-71 273.5 189 72.5
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 2.0e-71 273.1 255 55.3
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.3e-70 270.4 222 58.6
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.7e-70 270.0 221 58.8
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.9e-70 269.2 214 61.2
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 5.0e-70 268.5 222 59.5
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 8.4e-70 267.7 221 59.7
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.4e-69 266.9 221 57.9
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 1.4e-69 266.9 223 59.6
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 1.4e-69 266.9 223 59.6
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.9e-69 266.5 222 58.6
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.2e-69 265.8 242 55.8
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 4.2e-69 265.4 223 59.2
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 4.2e-69 265.4 223 59.2
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 4.2e-69 265.4 223 59.2
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 5.5e-69 265.0 220 59.5
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 5.5e-69 265.0 202 63.9
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 5.5e-69 265.0 226 62.4
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 9.3e-69 264.2 192 66.7
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.6e-68 263.5 236 56.8
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.6e-68 263.5 236 56.8
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 2.1e-68 263.1 218 60.1
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.7e-68 262.7 221 58.8
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.3e-67 260.4 217 58.5
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 3.0e-67 259.2 222 62.2
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.4e-64 250.4 228 59.6
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 4.1e-64 248.8 226 55.8
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 4.1e-64 248.8 226 55.8
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 4.1e-64 248.8 192 59.9
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.4e-63 245.7 227 55.5
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.2e-60 237.3 206 54.9
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 3.6e-60 235.7 188 62.2
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.7e-59 231.5 224 53.1
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 6.3e-57 224.9 150 70.7
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 6.9e-56 221.5 143 73.4
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.6e-55 219.5 185 58.4
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 4.5e-55 218.8 199 51.3
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 5.0e-54 215.3 160 60.0
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 6.5e-54 214.9 207 51.2
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.1e-52 209.9 157 65.0
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 5.1e-51 205.3 205 47.3
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 5.7e-50 201.8 232 50.4
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.7e-49 200.3 173 57.2
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 2.2e-49 199.9 215 48.4
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.4e-48 196.4 226 47.8
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 8.5e-46 188.0 173 57.2
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 4.2e-45 185.7 206 45.1
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 3.0e-43 179.5 211 42.2
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 5.2e-43 178.7 153 54.2
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.3e-41 174.1 227 44.9
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.2e-36 157.5 181 42.5
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.0e-35 154.5 116 62.9
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 1.2e-34 151.0 120 57.5
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.6e-34 149.8 120 57.5
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.2e-31 141.0 81 92.6
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 7.7e-31 138.3 91 73.6
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-30 137.5 88 73.9
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 9.5e-29 131.3 124 51.6
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.2e-26 124.4 146 42.5
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.8e-24 117.1 204 34.3
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.0e-22 109.0 154 44.2
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.0e-22 109.0 154 44.2
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 4.3e-21 105.9 73 67.1
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 5.7e-18 95.5 67 74.6
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.5e-15 86.3 71 59.2
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 5.9e-15 85.5 74 55.4
CAN.G1190.2 Capsicum annuum HOM05D001742 ORTHO05D001689 5.8e-10 68.9 223 28.7
CAN.G675.3 Capsicum annuum HOM05D001742 ORTHO05D001689 2.2e-09 67.0 205 27.8
Nitab4.5_0005797g0060 Nicotiana tabacum HOM05D001742 ORTHO05D001689 2.2e-09 67.0 202 28.7
Peaxi162Scf00195g00009 Petunia axillaris HOM05D001742 ORTHO05D001689 2.9e-09 66.6 202 27.2
Solyc02g069350.4 Solanum lycopersicum HOM05D001742 ORTHO05D001689 2.9e-09 66.6 202 29.7
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 4.9e-09 65.9 47 59.6
ATR0763G143 Amborella trichopoda HOM05D001742 ORTHO05D001689 1.1e-08 64.7 202 28.7
HPP92_012288 Vanilla planifolia HOM05D001742 ORTHO05D001689 1.9e-08 63.9 204 29.9
PGSC0003DMG400021208 Solanum tuberosum HOM05D001742 ORTHO05D001689 2.4e-08 63.5 202 27.7
Eucgr.E01925 Eucalyptus grandis HOM05D001742 ORTHO05D001689 3.5e-07 59.7 204 27.5
SalBow8G4513 Salvia bowleyana HOM05D001742 ORTHO05D001689 4.6e-07 59.3 205 26.8
THA.LOC104812714 Tarenaya hassleriana HOM05D001742 ORTHO05D001689 4.6e-07 59.3 205 25.4
Sopen02g018500 Solanum pennellii HOM05D001742 ORTHO05D001689 6.0e-07 58.9 216 29.2
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 1.7e-06 57.4 59 49.2
Ah.09g232270 Amaranthus hybridus HOM05D001742 ORTHO05D001689 2.3e-06 57.0 205 27.3
Peaxi162Scf00359g00107 Petunia axillaris HOM05D001742 ORTHO05D001689 2.3e-06 57.0 203 25.1
Zm00001eb370150 Zea mays HOM05D001742 ORTHO05D001689 2.3e-06 57.0 211 27.0
Phvul.006G025300 Phaseolus vulgaris HOM05D001742 ORTHO05D001689 3.0e-06 56.6 205 29.3
THA.LOC104798548 Tarenaya hassleriana HOM05D001742 ORTHO05D001689 3.0e-06 56.6 205 26.8
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 3.9e-06 56.2 41 63.4
CsaV3_4G032030 Cucumis sativus L. HOM05D001742 ORTHO05D001689 5.0e-06 55.8 204 26.5
Os01g0768200 Oryza sativa ssp. japonica HOM05D001742 ORTHO05D001689 6.6e-06 55.5 204 27.5
Zm00001eb352940 Zea mays HOM05D001742 ORTHO05D001689 8.6e-06 55.1 213 26.8


User provided reference genes

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