Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 0.0e+00 1122.1 589 100.0
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 7.4e-232 807.4 702 65.1
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.4e-230 803.1 702 64.7
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 2.8e-223 778.9 708 62.1
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 3.0e-217 758.8 710 60.0
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 2.0e-216 756.1 708 60.3
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 3.1e-214 748.8 708 59.2
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 9.1e-214 747.3 706 59.5
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 2.0e-213 746.1 708 59.6
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 1.0e-212 743.8 708 59.0
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 2.2e-212 742.7 706 59.6
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 3.8e-212 741.9 708 59.0
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 5.0e-212 741.5 706 58.5
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 8.5e-212 740.7 707 59.3
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 1.9e-211 739.6 707 59.3
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 3.2e-211 738.8 708 59.3
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 1.2e-210 736.9 708 58.5
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 1.8e-209 733.0 716 58.4
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 4.0e-209 731.9 708 59.3
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 5.2e-209 731.5 707 58.8
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 2.0e-208 729.6 708 58.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 5.7e-208 728.0 708 58.2
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 1.3e-207 726.9 708 58.1
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 1.3e-207 726.9 708 58.5
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 6.3e-207 724.5 706 58.2
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 1.8e-206 723.0 709 58.1
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 1.8e-206 723.0 708 59.0
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 2.4e-206 722.6 706 58.4
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 7.0e-206 721.1 708 58.5
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 9.1e-206 720.7 745 57.3
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 1.6e-205 719.9 708 57.5
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.0e-205 719.5 706 58.5
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 2.0e-205 719.5 708 58.2
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 2.7e-205 719.2 714 58.1
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 5.0e-204 714.9 708 58.1
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 8.6e-204 714.1 708 57.5
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 1.1e-203 713.8 706 57.6
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 3.3e-203 712.2 782 55.8
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 3.3e-203 712.2 668 59.9
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 5.5e-203 711.4 708 57.5
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 9.5e-203 710.7 706 57.5
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.1e-202 709.5 706 56.8
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 6.1e-202 708.0 707 56.7
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 8.0e-202 707.6 709 57.3
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.0e-201 707.2 706 56.7
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 2.3e-201 706.1 771 54.7
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 1.2e-200 703.7 706 56.4
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 4.4e-200 701.8 707 56.4
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 1.3e-199 700.3 706 56.1
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 6.3e-199 698.0 708 56.6
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 8.3e-199 697.6 709 56.7
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 7.0e-198 694.5 708 56.5
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 3.8e-196 688.7 681 57.7
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 1.9e-195 686.4 703 55.6
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 7.3e-195 684.5 708 55.9
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 6.1e-194 681.4 707 55.7
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 3.0e-193 679.1 666 58.0
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 7.5e-192 674.5 708 57.2
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 1.7e-191 673.3 708 54.5
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 1.2e-189 667.2 702 54.7
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 4.6e-189 665.2 706 54.7
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.0e-188 664.1 718 54.2
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.7e-188 663.3 674 57.3
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 2.3e-188 662.9 702 54.4
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 2.5e-187 659.4 703 54.2
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 5.6e-187 658.3 733 53.6
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 3.6e-186 655.6 703 53.8
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 1.1e-185 654.1 720 53.1
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 1.4e-185 653.7 706 53.3
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 1.8e-185 653.3 717 53.0
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 1.8e-185 653.3 717 53.0
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 1.8e-185 653.3 703 53.5
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 7.5e-184 647.9 702 53.4
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 3.7e-183 645.6 702 52.8
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 3.7e-183 645.6 722 52.6
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 3.7e-183 645.6 736 51.6
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 4.9e-183 645.2 710 53.9
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 3.2e-182 642.5 721 52.3
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 3.2e-182 642.5 736 51.1
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 1.6e-181 640.2 709 53.7
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 4.6e-181 638.6 652 56.4
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.5e-179 633.6 712 52.1
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 2.5e-179 632.9 683 54.9
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.2e-178 630.6 665 54.7
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 2.1e-178 629.8 705 52.9
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.3e-177 626.3 624 58.0
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 2.6e-176 622.9 715 52.4
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 4.4e-176 622.1 708 52.0
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 5.8e-176 621.7 688 54.1
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 3.7e-175 619.0 722 51.1
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 3.7e-175 619.0 705 52.5
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 3.7e-175 619.0 706 52.4
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 4.9e-175 618.6 721 51.3
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 3.2e-174 615.9 714 51.5
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 9.2e-174 614.4 691 52.1
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 6.2e-170 601.7 791 47.5
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 2.6e-168 596.3 664 52.4
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 9.9e-168 594.3 699 50.4
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 8.7e-164 581.3 722 49.3
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 7.3e-163 578.2 772 46.5
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 9.0e-161 571.2 701 47.9
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 8.4e-159 564.7 632 53.0
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 1.6e-157 560.5 701 47.8
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 4.6e-157 558.9 728 48.5
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.0e-156 557.8 775 45.7
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.0e-156 557.8 710 46.5
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 2.1e-149 533.5 676 49.3
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 8.7e-148 528.1 713 46.1
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 8.4e-143 511.5 659 48.0
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 8.4e-143 511.5 583 51.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.1e-138 496.9 651 47.9
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.7e-135 487.3 516 54.7
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 4.6e-125 452.6 351 70.1
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.8e-124 450.7 503 53.5
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 9.7e-123 444.9 719 39.5
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 9.1e-121 438.3 736 39.0
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.7e-119 434.1 364 66.2
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 2.2e-119 433.7 324 71.9
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.1e-115 421.4 319 70.8
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-107 394.8 285 73.3
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 7.4e-107 392.1 734 36.9
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 3.5e-104 383.3 706 35.8
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 2.2e-103 380.6 292 67.1
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 2.1e-101 374.0 522 46.9
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.0e-100 371.7 285 70.9
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.0e-96 357.5 716 34.4
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.0e-92 343.2 281 67.6
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 5.4e-89 332.8 226 75.2
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 4.1e-81 306.6 303 58.4
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 1.4e-65 255.0 578 35.1
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.7e-63 248.1 278 52.5
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 9.5e-62 242.3 194 66.0
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 8.1e-61 239.2 196 67.9
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 2.0e-59 234.6 196 67.9
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 2.6e-59 234.2 870 26.8
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 6.4e-58 229.6 163 71.2
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.4e-57 228.4 197 64.0
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 1.7e-55 221.5 196 63.3
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 1.4e-52 211.8 212 57.5
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 1.9e-38 164.9 106 75.5
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.8e-36 158.3 100 77.0
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.2e-35 155.6 171 52.6
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.6e-29 135.2 102 72.5
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 3.8e-26 124.0 103 60.2
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 4.9e-26 123.6 87 70.1
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.3e-21 109.0 87 67.8
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 5.8e-19 100.1 100 53.0
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.0e-18 99.4 96 55.2
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 3.2e-17 94.4 81 56.8
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.8e-15 88.6 49 87.8
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.3e-15 88.2 62 71.0
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.3e-15 88.2 62 71.0
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 2.2e-13 81.6 65 63.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 1.0e-10 72.8 58 60.3
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 3.8e-10 70.9 52 69.2
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 6.5e-10 70.1 66 57.6
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 5.1e-07 60.5 52 51.9


User provided reference genes

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