Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 0.0e+00 1356.3 709 100.0
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 2.0e-287 992.3 643 78.5
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 1.8e-269 932.6 666 72.8
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 6.0e-252 874.4 643 71.1
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 9.5e-250 867.1 645 67.0
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 4.4e-247 858.2 660 65.8
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.2e-246 855.9 644 67.7
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 2.2e-246 855.9 640 67.0
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-245 853.6 644 66.8
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 1.7e-243 846.3 639 67.4
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 1.1e-242 843.6 616 69.2
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.2e-241 840.1 640 65.8
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 3.6e-241 838.6 640 64.8
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 4.7e-241 838.2 640 65.2
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.8e-240 836.3 644 66.1
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.5e-239 833.2 645 65.4
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 5.8e-239 831.2 640 65.6
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 9.9e-239 830.5 641 66.9
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.2e-238 829.3 647 64.0
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 3.7e-238 828.6 665 64.4
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.9e-238 828.2 647 64.1
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.9e-237 826.2 647 64.0
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 3.2e-237 825.5 642 65.3
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 9.2e-237 823.9 659 63.1
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.2e-236 823.5 645 63.9
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.6e-236 823.2 686 63.1
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 2.1e-236 822.8 644 66.0
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 7.8e-236 820.8 672 62.9
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 7.8e-236 820.8 643 64.5
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.7e-235 819.7 640 63.8
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 3.0e-235 818.9 670 61.8
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 6.6e-235 817.8 642 64.0
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 8.6e-235 817.4 640 64.2
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.9e-234 816.2 664 63.4
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 3.3e-234 815.5 645 65.1
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 9.5e-234 813.9 664 63.3
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 9.5e-234 813.9 640 63.4
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 4.7e-233 811.6 641 63.7
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.4e-232 809.3 647 63.2
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 6.8e-232 807.7 658 62.0
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 9.9e-231 803.9 644 64.6
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.8e-230 802.0 647 62.1
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 6.4e-230 801.2 644 64.4
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 6.4e-230 801.2 665 62.9
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 8.4e-230 800.8 738 59.3
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 1.1e-229 800.4 670 61.9
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 1.4e-229 800.0 665 62.7
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.4e-229 798.1 640 63.9
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.2e-228 797.0 639 62.9
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.6e-228 796.6 639 63.1
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 1.6e-228 796.6 643 63.5
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 2.7e-228 795.8 674 61.0
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 2.3e-227 792.7 643 63.1
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 3.0e-227 792.3 639 63.2
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 3.0e-227 792.3 641 64.3
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 6.6e-227 791.2 631 63.5
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 1.1e-226 790.4 643 63.1
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.3e-226 788.9 664 62.2
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 9.6e-226 787.3 639 62.6
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.2e-225 786.9 671 62.0
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.1e-225 786.2 665 62.1
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 2.8e-225 785.8 671 61.7
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 3.6e-225 785.4 665 61.4
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 4.7e-225 785.0 645 62.9
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.1e-224 783.9 644 63.4
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 6.9e-224 781.2 665 61.4
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 3.4e-223 778.9 665 60.6
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 4.4e-223 778.5 646 61.3
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.3e-222 776.9 637 63.0
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 3.8e-222 775.4 671 59.6
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 8.4e-222 774.2 639 60.6
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.9e-221 773.1 698 59.5
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 7.1e-221 771.2 645 60.6
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 9.3e-221 770.8 640 62.2
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-220 770.0 651 61.8
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 4.6e-220 768.5 643 61.6
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 1.0e-219 767.3 651 61.6
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 2.3e-219 766.1 635 62.2
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 3.9e-219 765.4 643 61.6
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 6.6e-219 764.6 647 60.1
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.1e-218 763.8 692 57.5
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 1.3e-217 760.4 639 61.7
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 1.8e-216 756.5 630 61.0
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 2.4e-216 756.1 536 72.4
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 4.0e-216 755.4 649 59.3
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 1.2e-215 753.8 689 58.1
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.6e-215 752.7 664 59.2
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 3.4e-215 752.3 639 60.9
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 3.4e-215 752.3 639 59.9
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 9.9e-215 750.7 639 60.7
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 9.9e-215 750.7 639 60.7
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.7e-214 750.0 670 59.3
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 3.8e-214 748.8 641 61.3
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 8.4e-214 747.7 662 57.7
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 5.4e-213 745.0 645 59.8
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.1e-212 743.0 639 60.7
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 2.7e-212 742.7 599 63.4
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.1e-210 737.3 646 60.4
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.5e-210 736.9 639 59.9
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 3.3e-210 735.7 640 60.0
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.3e-210 735.7 643 60.0
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 5.6e-210 734.9 639 59.9
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.3e-209 733.8 644 57.8
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.6e-209 733.4 643 60.5
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 2.1e-209 733.0 633 61.1
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 2.8e-209 732.6 620 60.6
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 4.8e-209 731.9 597 63.0
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 8.1e-209 731.1 639 59.9
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 2.4e-208 729.6 762 52.4
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 2.2e-206 723.0 675 55.7
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 2.2e-206 723.0 644 57.1
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 1.2e-204 717.2 646 57.6
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 2.1e-204 716.5 601 60.7
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 2.7e-204 716.1 648 59.0
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 2.7e-204 716.1 648 59.0
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 3.5e-204 715.7 639 58.5
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 1.0e-203 714.1 598 59.9
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 1.3e-203 713.8 659 56.0
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 5.6e-202 708.4 646 58.2
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 1.3e-201 707.2 648 58.0
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 1.3e-201 707.2 648 58.0
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 3.7e-201 705.7 756 51.3
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 4.8e-201 705.3 638 58.2
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.7e-198 696.8 643 57.4
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.3e-195 687.2 639 57.1
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 5.7e-194 681.8 641 56.0
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 1.6e-193 680.2 658 55.6
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.8e-193 679.5 638 56.1
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 8.2e-193 677.9 667 53.1
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 5.3e-192 675.2 647 56.3
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 1.4e-187 660.6 625 57.6
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 8.8e-187 657.9 701 53.1
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 3.7e-185 652.5 659 53.0
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 3.4e-183 646.0 641 55.7
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 2.5e-181 639.8 682 52.6
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.0e-179 634.4 681 52.3
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 8.0e-164 581.6 624 49.8
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 8.6e-150 535.0 647 47.9
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.0e-147 526.6 567 52.2
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 3.5e-143 513.1 503 55.9
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.0e-142 511.5 695 45.6
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 6.0e-127 459.1 314 75.5
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 2.8e-124 450.3 644 41.0
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.7e-121 441.0 439 55.8
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 6.2e-100 369.4 431 49.4
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 6.4e-97 359.4 572 40.4
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 1.3e-94 351.7 302 61.3
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 2.1e-92 344.4 282 64.2
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.2e-90 338.6 328 57.0
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 3.9e-86 323.6 316 52.5
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.8e-83 314.7 273 59.7
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 3.4e-74 283.9 330 49.7
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.1e-64 252.3 377 41.6
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 9.1e-59 232.6 295 48.5
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 1.2e-58 232.3 574 32.9
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.0e-55 219.5 263 50.6
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 6.7e-54 216.5 335 43.6
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 4.4e-53 213.8 299 42.8
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.0e-49 200.3 178 58.4
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.2e-48 197.6 641 26.4
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.2e-47 195.7 227 49.3
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-37 162.5 108 72.2
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 8.6e-33 146.4 192 46.4
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 7.3e-32 143.3 197 43.7
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 3.6e-31 141.0 128 54.7
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 4.7e-31 140.6 118 61.0
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 8.3e-28 129.8 96 65.6
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.0e-25 122.9 91 62.6
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.9e-25 120.9 162 43.2
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-24 118.6 79 72.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 5.6e-24 117.1 80 70.0
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 5.6e-24 117.1 80 70.0
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.6e-23 115.5 207 38.2
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 1.1e-16 92.8 107 48.6
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 5.6e-16 90.5 262 32.1
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 3.6e-15 87.8 83 55.4
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 4.7e-15 87.4 67 65.7
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.4e-11 75.9 143 37.1
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.0e-09 68.2 118 33.9
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 5.1e-09 67.4 113 38.1
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 2.5e-08 65.1 181 32.0
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 3.3e-08 64.7 46 67.4


User provided reference genes

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