Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 6.4e-131 470.7 229 100.0
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 9.0e-101 370.5 229 79.5
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.1e-95 353.6 230 74.3
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.0e-92 342.8 229 72.9
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.2e-84 317.0 189 78.8
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 3.4e-84 315.5 172 85.5
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 7.7e-84 314.3 231 68.4
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 5.0e-83 311.6 226 67.7
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 8.5e-83 310.8 232 70.3
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.1e-82 310.5 231 67.5
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.6e-81 306.6 229 65.5
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 1.0e-80 303.9 187 78.1
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.4e-80 303.5 235 66.8
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 1.8e-80 303.1 233 64.4
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 2.3e-80 302.8 178 79.2
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 6.7e-80 301.2 234 66.7
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.1e-79 300.4 234 66.7
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 2.0e-79 299.7 193 72.0
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.3e-79 298.9 234 65.8
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 4.4e-79 298.5 230 67.4
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 4.4e-79 298.5 230 68.7
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 4.4e-79 298.5 230 68.3
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.4e-79 298.5 231 66.2
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 5.7e-79 298.1 210 69.5
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 7.4e-79 297.7 230 68.3
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 7.4e-79 297.7 176 77.8
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 7.4e-79 297.7 203 70.4
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 9.7e-79 297.4 224 65.6
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 1.3e-78 297.0 234 65.8
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.7e-78 296.6 231 65.8
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.2e-78 296.2 234 65.4
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 4.8e-78 295.0 206 69.4
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 6.3e-78 294.7 213 71.4
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 6.3e-78 294.7 231 65.8
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 6.3e-78 294.7 235 64.7
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 6.3e-78 294.7 224 65.2
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 8.2e-78 294.3 206 68.9
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 1.8e-77 293.1 194 71.6
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 2.4e-77 292.7 204 68.1
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 4.1e-77 292.0 229 64.2
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 7.0e-77 291.2 234 65.4
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 1.2e-76 290.4 184 76.6
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 1.5e-76 290.0 206 68.4
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 2.0e-76 289.7 194 70.6
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.6e-76 289.3 195 72.8
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 4.5e-76 288.5 178 77.5
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 4.5e-76 288.5 224 64.7
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 5.9e-76 288.1 197 71.1
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 7.7e-76 287.7 187 71.1
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 7.7e-76 287.7 241 61.0
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 7.7e-76 287.7 200 71.5
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 1.3e-75 287.0 198 71.2
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 1.3e-75 287.0 176 76.1
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 2.5e-74 282.7 176 75.0
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 3.2e-74 282.3 178 74.7
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.2e-74 282.0 157 83.4
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 4.2e-74 282.0 232 64.7
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 5.5e-74 281.6 215 66.0
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 5.5e-74 281.6 214 65.0
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 1.2e-73 280.4 234 60.3
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.1e-73 279.6 179 73.2
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 2.3e-72 276.2 178 71.9
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 3.9e-72 275.4 175 73.7
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 5.2e-72 275.0 212 65.1
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 6.7e-72 274.6 180 68.9
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 5.7e-71 271.6 215 66.5
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.3e-70 270.4 183 71.0
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 1.7e-70 270.0 193 65.8
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 4.8e-70 268.5 209 65.6
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 4.8e-70 268.5 193 65.3
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 6.3e-70 268.1 168 76.2
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 6.3e-70 268.1 168 76.2
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 1.1e-69 267.3 201 67.7
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.4e-69 266.9 231 62.8
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.4e-69 266.9 227 60.8
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.8e-69 266.5 182 68.7
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 2.4e-69 266.2 193 64.2
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 9.1e-69 264.2 201 67.7
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.2e-68 263.8 201 67.2
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.2e-68 263.8 201 67.2
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 2.0e-68 263.1 210 64.8
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.6e-68 262.7 206 66.5
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 4.5e-68 261.9 177 67.8
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.3e-67 260.4 206 65.0
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 2.2e-67 259.6 231 61.5
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 2.2e-67 259.6 231 61.0
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 1.1e-66 257.3 236 59.7
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.5e-66 256.9 229 62.0
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 5.5e-66 255.0 200 66.5
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.4e-66 254.2 158 74.1
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.6e-65 253.4 160 74.4
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.8e-64 250.0 155 76.1
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 8.8e-64 247.7 229 57.6
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 4.4e-63 245.4 175 62.3
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 5.7e-63 245.0 156 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.7e-62 243.4 167 67.1
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 3.7e-62 242.3 194 59.8
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.2e-60 237.3 149 70.5
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 1.5e-58 230.3 210 58.6
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 9.4e-58 227.6 193 60.6
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.4e-56 223.8 174 64.4
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 5.2e-56 221.9 193 59.6
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 6.8e-56 221.5 187 62.0
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 1.3e-54 217.2 237 51.5
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 3.7e-54 215.7 209 56.0
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 7.7e-52 208.0 229 50.7
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.6e-49 200.3 218 53.7
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 9.8e-47 191.0 195 47.7
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 9.8e-47 191.0 113 79.6
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.7e-46 190.3 173 60.1
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.7e-46 190.3 113 76.1
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 2.9e-43 179.5 111 74.8
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 7.5e-39 164.9 119 67.2
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.8e-39 164.5 95 80.0
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.3e-34 149.4 95 71.6
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 9.5e-34 147.9 126 57.1
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 1.4e-32 144.1 116 63.8
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.2e-32 142.1 76 84.2
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.9e-30 136.3 101 65.3
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 3.7e-30 136.0 83 72.3
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 4.9e-30 135.6 157 45.9
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 9.5e-26 121.3 70 78.6
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.1e-24 117.9 142 47.9
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.8e-24 117.1 70 75.7
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 4.0e-24 115.9 116 55.2
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 7.1e-21 105.1 80 61.2
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 4.3e-18 95.9 73 60.3
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 9.6e-18 94.7 54 77.8
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 3.4e-15 86.3 98 49.0
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 5.8e-15 85.5 69 62.3
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 3.0e-11 73.2 59 59.3


User provided reference genes

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