Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.6e-280 968.8 494 100.0
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 4.2e-188 661.8 408 84.1
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.7e-187 659.1 496 68.1
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.4e-186 656.8 496 67.7
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 7.0e-183 644.4 497 67.2
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 8.8e-178 627.5 496 64.5
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 8.9e-162 574.3 497 60.2
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.1e-156 557.4 495 59.4
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 7.3e-156 554.7 495 59.0
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 2.3e-154 549.7 495 59.2
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.5e-153 547.0 496 58.1
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 2.9e-152 542.7 495 58.4
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.9e-151 540.0 483 58.4
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 4.1e-151 538.9 483 57.1
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 1.2e-150 537.3 500 56.6
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.9e-148 530.0 495 56.2
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 4.3e-148 528.9 478 59.0
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.2e-147 527.3 495 56.0
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 1.6e-147 526.9 487 58.1
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.1e-147 526.6 476 58.6
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 2.8e-147 526.2 495 55.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.8e-147 526.2 500 57.6
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 2.8e-147 526.2 493 57.0
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 3.6e-147 525.8 484 56.0
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 1.1e-146 524.2 494 54.9
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 1.8e-146 523.5 491 56.6
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.3e-146 523.1 495 55.2
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.3e-146 523.1 485 56.1
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.3e-146 523.1 481 55.9
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 4.0e-146 522.3 496 56.0
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.8e-146 521.5 485 55.9
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 8.9e-146 521.2 495 54.9
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 8.9e-146 521.2 494 55.3
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 2.0e-145 520.0 496 57.3
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.8e-145 518.5 481 55.5
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.3e-144 517.3 481 55.5
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 1.7e-144 516.9 486 55.8
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 2.9e-144 516.2 498 55.8
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.3e-144 514.6 495 54.7
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.1e-143 512.3 495 54.7
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 3.5e-142 509.2 495 54.5
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 7.8e-142 508.1 493 54.2
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.0e-141 506.1 481 54.9
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.5e-140 503.8 485 54.6
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 4.7e-139 498.8 497 51.5
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 4.7e-139 498.8 497 51.5
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.2e-137 494.2 480 54.4
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 1.5e-137 493.8 498 50.6
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 2.6e-137 493.0 497 52.9
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 4.4e-137 492.3 490 54.5
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 5.8e-137 491.9 493 52.9
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 7.6e-137 491.5 493 52.3
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.2e-136 490.0 496 52.6
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.9e-136 489.6 496 53.0
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 4.9e-136 488.8 493 52.9
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 8.4e-136 488.0 484 53.9
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 1.4e-135 487.3 490 54.3
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 3.2e-135 486.1 494 54.5
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 9.2e-135 484.6 487 54.2
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 1.6e-134 483.8 487 53.0
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.6e-134 483.8 485 53.4
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 1.6e-134 483.8 494 52.6
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.7e-134 483.0 489 53.4
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 6.0e-134 481.9 490 52.4
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 1.3e-133 480.7 473 53.9
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 1.7e-133 480.3 495 53.1
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 3.0e-133 479.6 488 52.3
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.5e-132 477.2 497 52.1
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 2.5e-132 476.5 488 51.4
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 3.3e-132 476.1 487 51.1
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 7.3e-132 474.9 491 53.4
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 1.6e-131 473.8 482 51.0
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-131 473.4 497 52.5
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.6e-131 472.6 477 52.0
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.1e-131 471.5 488 52.0
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.8e-130 470.3 487 52.6
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 1.8e-130 470.3 482 51.9
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 5.2e-130 468.8 485 50.7
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 6.9e-130 468.4 487 52.8
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 2.0e-129 466.8 480 51.9
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.6e-129 466.5 495 49.7
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 3.4e-129 466.1 493 51.9
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.4e-129 465.7 493 50.1
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 4.4e-129 465.7 487 52.4
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 7.6e-129 464.9 496 50.6
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 3.8e-128 462.6 490 51.8
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 4.9e-128 462.2 487 51.7
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 4.9e-128 462.2 497 51.7
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.1e-127 461.1 487 52.2
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 4.2e-127 459.1 484 50.2
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 1.2e-126 457.6 522 48.5
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 1.6e-126 457.2 372 63.4
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.7e-125 453.8 499 49.1
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.7e-125 453.8 484 48.6
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 2.1e-123 446.8 484 50.4
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 3.6e-123 446.0 501 48.1
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 8.1e-123 444.9 484 49.4
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.4e-122 444.1 495 48.7
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 9.9e-121 438.0 493 48.3
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.7e-120 437.2 422 54.5
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 9.3e-119 431.4 487 49.1
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 1.6e-118 430.6 372 57.8
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 6.0e-118 428.7 488 49.2
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.0e-117 426.4 485 48.7
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 2.4e-114 416.8 487 47.2
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.1e-114 416.4 479 50.3
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 1.1e-108 397.9 382 55.2
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 3.3e-108 396.4 472 46.8
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.6e-107 394.0 492 46.3
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 2.0e-105 387.1 432 49.8
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 4.8e-99 365.9 526 39.5
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 5.0e-96 355.9 467 44.5
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.5e-95 353.6 410 46.8
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 5.3e-90 335.9 468 43.6
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 1.3e-88 331.3 329 53.5
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.2e-88 330.5 377 48.5
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.4e-85 321.2 490 37.6
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.5e-84 317.8 468 41.9
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 9.7e-84 315.1 290 53.8
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 8.2e-83 312.0 291 54.3
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 2.9e-80 303.5 290 53.4
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.2e-77 292.7 495 37.4
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 7.0e-74 282.3 267 53.2
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 2.3e-69 267.3 364 45.6
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.6e-68 263.8 414 38.2
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.2e-67 260.8 435 37.2
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 9.1e-66 255.4 321 46.4
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 4.5e-65 253.1 358 40.5
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 5.5e-63 246.1 475 34.7
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.2e-62 245.0 376 40.7
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.0e-61 241.9 294 44.2
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.4e-58 231.5 487 32.6
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 3.1e-58 230.3 185 64.3
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 4.1e-58 229.9 484 33.9
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 9.1e-58 228.8 247 53.8
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 3.5e-57 226.9 258 48.1
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 2.9e-56 223.8 539 32.3
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 3.8e-56 223.4 377 35.0
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 6.6e-56 222.6 596 31.0
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 1.5e-55 221.5 185 62.7
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 7.2e-55 219.2 160 61.9
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 3.6e-54 216.9 477 32.3
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.6e-54 216.9 233 50.2
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 1.1e-50 205.3 233 48.9
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.1e-47 195.3 497 30.6
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.9e-47 194.5 173 57.8
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 4.7e-46 189.9 422 32.0
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 3.1e-45 187.2 640 26.7
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.9e-42 177.9 279 40.9
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 6.2e-38 162.9 253 39.5
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 1.8e-37 161.4 192 44.8
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 1.3e-35 155.2 259 37.8
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.7e-35 154.8 479 28.2
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-34 152.1 364 31.3
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 2.1e-33 147.9 452 27.9
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 5.6e-31 139.8 127 55.9
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 2.1e-30 137.9 145 51.0
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 2.8e-30 137.5 93 66.7
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.4e-26 125.2 116 58.6
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 1.9e-26 124.8 133 48.9
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 3.2e-26 124.0 132 49.2
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.1e-25 121.3 97 58.8
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 6.6e-24 116.3 125 45.6
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-23 115.5 146 43.8
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 7.3e-23 112.8 323 30.3
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 2.2e-19 101.3 110 47.3
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 3.2e-18 97.4 103 44.7
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-12 79.0 120 35.8
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 5.8e-12 76.6 173 27.2
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 1.7e-11 75.1 146 32.9
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 1.6e-06 58.5 70 35.7


User provided reference genes

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