Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.1e-45 186.0 83 100.0
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 4.8e-44 180.6 83 95.2
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 5.9e-42 173.7 85 90.6
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.6e-39 165.6 84 84.5
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 4.6e-39 164.1 83 85.5
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 6.1e-39 163.7 84 84.5
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 6.1e-39 163.7 83 85.5
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.4e-38 162.5 83 83.1
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.4e-38 162.5 83 83.1
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.3e-38 161.8 84 83.3
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.3e-38 161.8 84 82.1
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 3.0e-38 161.4 82 84.1
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.0e-38 161.4 82 84.1
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 3.9e-38 161.0 81 82.7
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 3.9e-38 161.0 81 82.7
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.9e-38 161.0 86 81.4
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 6.7e-38 160.2 85 81.2
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 8.8e-38 159.8 82 81.7
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.1e-37 159.5 86 80.2
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.1e-37 159.5 86 80.2
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.1e-37 159.5 83 83.1
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 1.1e-37 159.5 86 80.2
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.1e-37 159.5 86 77.9
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.5e-37 159.1 81 84.0
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.5e-37 159.1 82 82.9
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.5e-37 159.1 87 81.6
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.5e-37 159.1 79 86.1
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 2.5e-37 158.3 82 82.9
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 2.5e-37 158.3 82 82.9
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 3.3e-37 157.9 84 79.8
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.3e-37 157.5 84 79.8
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.3e-37 157.5 84 79.8
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.3e-37 157.5 84 79.8
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 4.3e-37 157.5 82 80.5
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 5.7e-37 157.1 84 79.8
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.7e-37 157.1 85 78.8
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 5.7e-37 157.1 85 84.7
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 7.4e-37 156.8 84 81.0
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 7.4e-37 156.8 83 81.9
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.3e-36 156.0 84 79.8
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.7e-36 155.6 84 79.8
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 1.7e-36 155.6 86 79.1
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 2.2e-36 155.2 82 81.7
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 2.2e-36 155.2 84 79.8
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 2.2e-36 155.2 84 79.8
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.8e-36 154.8 89 79.8
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 3.7e-36 154.5 82 76.8
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.7e-36 154.5 86 77.9
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.7e-36 154.5 82 78.0
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 3.7e-36 154.5 87 77.0
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.8e-36 154.1 86 76.7
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.8e-36 154.1 86 76.7
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 4.8e-36 154.1 84 79.8
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 4.8e-36 154.1 82 81.7
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 6.3e-36 153.7 82 81.7
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 6.3e-36 153.7 82 79.3
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 8.2e-36 153.3 81 80.2
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 8.2e-36 153.3 82 79.3
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.1e-35 152.9 83 79.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 1.4e-35 152.5 84 78.6
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 1.4e-35 152.5 86 79.1
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.4e-35 152.5 81 80.2
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-35 152.1 80 81.2
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 1.8e-35 152.1 80 81.2
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.8e-35 152.1 82 80.5
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.8e-35 152.1 86 75.6
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.1e-35 151.4 81 79.0
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 3.1e-35 151.4 82 79.3
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 3.1e-35 151.4 84 78.6
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 4.1e-35 151.0 82 79.3
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 4.1e-35 151.0 81 80.2
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.1e-35 151.0 82 78.0
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.1e-35 151.0 82 78.0
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 4.1e-35 151.0 82 79.3
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 4.1e-35 151.0 82 79.3
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 4.1e-35 151.0 82 79.3
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 4.1e-35 151.0 87 74.7
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 5.3e-35 150.6 82 78.0
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 5.3e-35 150.6 82 78.0
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 5.3e-35 150.6 83 81.9
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 9.1e-35 149.8 84 79.8
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.2e-34 149.4 86 74.4
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.2e-34 149.4 82 76.8
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.2e-34 149.4 81 77.8
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-34 148.7 81 79.0
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 2.0e-34 148.7 82 76.8
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.6e-34 148.3 84 76.2
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.6e-34 148.3 87 74.7
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 4.5e-34 147.5 81 76.5
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 4.5e-34 147.5 87 73.6
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 7.7e-34 146.7 84 76.2
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-33 146.0 81 77.8
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.7e-33 145.6 79 79.7
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 2.2e-33 145.2 80 76.2
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 2.9e-33 144.8 81 77.8
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 2.9e-33 144.8 88 72.7
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 2.9e-33 144.8 83 73.5
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 3.8e-33 144.4 81 77.8
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 3.8e-33 144.4 81 77.8
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.1e-32 142.9 81 76.5
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.1e-32 142.9 83 75.9
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.1e-32 142.9 85 72.9
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 3.2e-32 141.4 81 75.3
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 5.5e-32 140.6 86 73.3
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 7.2e-32 140.2 85 71.8
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 3.6e-31 137.9 78 74.4
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 4.4e-29 131.0 72 75.0
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 5.7e-29 130.6 63 85.7
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 8.2e-28 126.7 93 61.3
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 3.1e-27 124.8 153 43.8
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.0e-26 122.1 63 81.0
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.5e-26 121.3 59 89.8
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 5.0e-25 117.5 82 65.9
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 7.2e-24 113.6 80 65.0
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 7.2e-24 113.6 59 84.7
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-22 108.2 58 79.3
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-22 108.2 58 79.3
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-22 108.2 63 73.0
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 4.0e-22 107.8 66 71.2
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 6.7e-22 107.1 66 77.3
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.1e-21 106.3 58 74.1
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 3.3e-21 104.8 57 80.7
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 3.3e-21 104.8 60 76.7
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 5.7e-21 104.0 63 74.6
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 9.7e-21 103.2 61 67.2
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.3e-20 102.8 58 77.6
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.7e-20 102.4 59 71.2
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 2.2e-20 102.1 61 73.8
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.7e-20 101.3 58 72.4
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 3.7e-20 101.3 58 77.6
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 3.7e-20 101.3 60 73.3
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 6.3e-20 100.5 58 77.6
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 8.2e-20 100.1 60 75.0
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.4e-19 99.4 61 68.9
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 3.1e-19 98.2 56 78.6
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 5.3e-19 97.4 58 70.7
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 5.3e-19 97.4 58 75.9
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 9.1e-19 96.7 61 68.9
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.2e-18 96.3 56 75.0
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.0e-18 95.5 60 66.7
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 9.4e-16 86.7 76 55.3
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.0e-14 83.2 61 59.0
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.3e-14 82.0 70 52.9
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 6.8e-14 80.5 65 53.8
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 1.4e-11 72.8 63 55.6


User provided reference genes

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