Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 4.3e-81 304.7 162 100.0
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 5.9e-30 134.8 115 67.8
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 1.6e-27 126.7 124 58.1
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 1.8e-26 123.2 138 48.6
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 2.3e-26 122.9 138 50.7
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 2.3e-26 122.9 143 46.2
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 2.3e-26 122.9 146 48.6
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 3.0e-26 122.5 145 52.4
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 3.0e-26 122.5 127 51.2
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.1e-25 120.6 151 49.0
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 2.6e-25 119.4 136 48.5
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 4.4e-25 118.6 140 48.6
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 5.7e-25 118.2 125 52.0
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 1.3e-24 117.1 133 49.6
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 1.7e-24 116.7 140 49.3
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.2e-24 116.3 144 47.2
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 4.8e-24 115.2 134 50.0
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.8e-23 113.2 148 43.9
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 1.8e-23 113.2 157 47.1
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.1e-23 112.1 136 49.3
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 5.3e-23 111.7 147 44.9
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 2.0e-22 109.8 140 46.4
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 2.0e-22 109.8 140 45.0
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 2.7e-22 109.4 135 48.1
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 2.7e-22 109.4 154 42.9
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 2.7e-22 109.4 136 49.3
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 3.5e-22 109.0 136 48.5
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 3.5e-22 109.0 143 46.2
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 3.5e-22 109.0 147 46.3
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 4.5e-22 108.6 180 41.7
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 4.5e-22 108.6 121 51.2
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 7.7e-22 107.8 147 43.5
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.7e-21 106.7 129 45.7
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 2.9e-21 105.9 149 46.3
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 3.8e-21 105.5 135 47.4
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 8.5e-21 104.4 147 42.9
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 8.5e-21 104.4 159 44.7
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 8.5e-21 104.4 127 49.6
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 1.1e-20 104.0 133 46.6
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 1.5e-20 103.6 135 43.7
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 2.5e-20 102.8 129 45.0
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 2.5e-20 102.8 136 45.6
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 2.5e-20 102.8 121 49.6
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.2e-20 102.4 129 45.0
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.2e-20 102.1 129 45.0
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 4.2e-20 102.1 136 44.9
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 4.2e-20 102.1 148 39.9
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 5.5e-20 101.7 153 41.8
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 9.4e-20 100.9 132 47.0
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 9.4e-20 100.9 138 44.9
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 1.2e-19 100.5 152 43.4
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 1.2e-19 100.5 134 45.5
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 1.2e-19 100.5 152 40.8
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 1.2e-19 100.5 146 43.2
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.1e-19 99.8 121 48.8
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 2.1e-19 99.8 161 42.9
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 3.6e-19 99.0 130 44.6
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 3.6e-19 99.0 150 43.3
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 4.7e-19 98.6 149 42.3
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 1.8e-18 96.7 145 42.8
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 1.8e-18 96.7 139 44.6
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 4.0e-18 95.5 166 40.4
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 6.8e-18 94.7 139 45.3
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 8.8e-18 94.4 136 41.9
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 1.2e-17 94.0 148 39.2
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 1.5e-17 93.6 139 41.0
AUR62022552 Chenopodium quinoa HOM05D006065 ORTHO05D007672 2.0e-17 93.2 89 61.8
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 2.0e-17 93.2 145 40.7
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 2.6e-17 92.8 139 44.6
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 4.4e-17 92.0 135 44.4
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 9.8e-17 90.9 126 48.4
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 1.3e-16 90.5 135 41.5
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 1.3e-16 90.5 143 42.0
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 1.3e-16 90.5 143 41.3
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 1.7e-16 90.1 135 43.7
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 2.2e-16 89.7 148 41.9
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 2.2e-16 89.7 129 40.3
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 2.8e-16 89.4 161 41.0
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 4.8e-16 88.6 148 37.8
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 6.3e-16 88.2 148 37.2
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 8.3e-16 87.8 159 40.3
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.1e-15 87.4 120 43.3
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 3.1e-15 85.9 137 39.4
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 4.1e-15 85.5 137 39.4
AUR62004346 Chenopodium quinoa HOM05D006065 ORTHO05D007672 5.4e-15 85.1 91 56.0
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 5.4e-15 85.1 124 41.1
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 7.0e-15 84.7 140 42.1
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.2e-14 84.0 134 41.0
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.2e-14 84.0 119 41.2
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 2.0e-14 83.2 119 40.3
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 2.0e-14 83.2 137 39.4
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.7e-14 82.8 143 37.8
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 3.5e-14 82.4 137 40.1
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 4.5e-14 82.0 129 39.5
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 4.5e-14 82.0 120 40.0
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 7.7e-14 81.3 71 60.6
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.0e-13 80.9 157 36.3
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 1.0e-13 80.9 213 32.4
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 2.9e-13 79.3 134 39.6
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.9e-12 76.6 122 36.1
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 2.5e-12 76.3 134 35.8
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 3.2e-12 75.9 134 34.3
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 3.6e-11 72.4 126 38.9
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 3.6e-11 72.4 125 40.8
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 1.0e-10 70.9 219 32.9
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 2.3e-10 69.7 134 33.6
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 4.0e-10 68.9 135 33.3
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 5.2e-10 68.6 138 34.8
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 5.2e-10 68.6 138 34.8
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 5.2e-10 68.6 138 34.8
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 2.0e-09 66.6 134 35.8
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 2.0e-09 66.6 155 31.0
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.7e-08 63.5 138 34.1
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 2.2e-08 63.2 157 36.9
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 3.7e-08 62.4 184 29.3
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 6.3e-08 61.6 103 39.8
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.1e-07 60.8 138 33.3
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 1.1e-07 60.8 95 38.9
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 2.0e-06 56.6 70 50.0
Potri.002G159100 Populus trichocarpa HOM05D006065 ORTHO05D007672 2.7e-06 56.2 55 58.2


User provided reference genes

Program Settings