Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1932.1 997 100.0
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1388.2 1013 71.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 1043 67.5
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1323.1 1039 67.7
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 997 69.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1290.8 1048 65.8
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1260.0 1042 64.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1253.4 1042 64.2
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1252.7 1042 63.2
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1246.5 1035 63.6
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1246.5 1039 63.5
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1242.6 1036 63.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1241.1 1042 63.2
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1240.7 1049 62.5
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1239.6 1046 63.5
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1237.2 1042 63.1
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1234.6 1042 63.1
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1233.4 1043 63.4
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1233.0 1042 62.7
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1231.9 1040 63.4
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1226.1 1037 63.1
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1225.3 1052 61.9
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1224.9 1039 63.3
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1224.5 1046 62.5
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1221.8 1042 63.3
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1221.8 1041 62.7
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1219.9 1048 62.0
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1219.1 1044 62.3
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1218.0 1048 61.7
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1217.2 1062 61.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1216.4 1055 61.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1215.3 1048 61.6
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1213.7 1048 61.5
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1213.4 1035 63.4
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1212.6 1055 61.8
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1209.1 1043 62.8
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1208.7 1073 61.0
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1208.7 1042 61.9
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1208.0 1065 60.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1207.2 1062 61.3
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1206.4 1042 61.8
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1204.5 1040 62.9
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1204.1 1042 62.5
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1203.0 1045 62.3
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1202.6 1044 61.9
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1202.6 1046 61.2
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1202.2 1003 63.2
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1198.3 1046 61.9
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1198.0 1048 61.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1198.0 1046 61.5
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1197.2 1043 61.6
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1196.8 1039 60.8
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1196.8 1039 61.6
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1196.4 1043 61.6
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1194.9 993 63.5
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1193.7 1047 61.9
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1193.7 1046 62.0
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1192.9 1044 62.5
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1190.3 1042 61.8
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1189.9 1090 59.3
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1189.1 1044 60.2
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1189.1 1044 61.3
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1188.3 1045 60.2
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1185.6 1045 60.3
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1180.2 1044 59.8
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1179.9 1043 62.0
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1179.1 1037 61.3
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1178.3 1003 63.0
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1177.2 1042 59.9
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1177.2 1044 60.0
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1177.2 1045 59.9
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1175.6 1044 60.1
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1175.6 1088 59.1
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1173.7 1044 59.8
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1173.7 1044 59.3
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1173.3 1046 59.7
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1173.3 1044 59.8
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1172.9 1004 62.1
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1171.4 1044 59.7
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1169.5 1038 60.0
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1168.7 1036 60.7
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1162.9 973 63.1
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1160.2 967 64.4
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1156.7 1003 61.7
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1130.9 1003 61.6
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1116.7 1045 59.0
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1112.8 1043 58.7
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1112.1 1044 59.6
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1109.7 1042 58.8
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1099.7 1040 57.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1096.6 1019 59.0
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1096.6 1046 57.7
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1095.9 1040 57.7
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1093.2 1138 53.6
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1090.9 1048 57.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1085.9 1033 57.5
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1082.4 1047 56.9
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1082.0 1041 57.2
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1080.5 1035 57.7
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1078.9 1034 58.2
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.7e-311 1072.0 795 71.6
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 3.3e-309 1065.1 1001 59.8
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 6.5e-305 1050.8 981 57.4
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 2.5e-304 1048.9 1031 55.7
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 2.1e-303 1045.8 1068 55.0
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 8.0e-303 1043.9 1037 56.5
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 5.2e-302 1041.2 850 64.9
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 1.2e-298 1030.0 1139 50.8
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 1.0e-297 1026.9 1062 55.0
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 1.5e-296 1023.1 1042 54.1
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 7.2e-296 1020.8 1031 53.9
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 9.4e-296 1020.4 1172 49.5
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.4e-294 1016.5 949 59.5
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 7.0e-291 1004.2 1034 52.5
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 1.7e-281 973.0 1046 53.7
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 3.6e-279 965.3 931 59.6
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 8.6e-273 944.1 842 60.5
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 1.6e-271 939.9 1045 52.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 6.8e-270 934.5 966 54.2
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.3e-268 930.2 853 59.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 3.7e-268 928.7 1021 52.4
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.6e-242 843.6 979 49.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 9.3e-235 817.8 847 53.7
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.5e-229 800.4 1059 45.0
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 7.6e-229 798.1 1047 45.3
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.0e-225 787.7 661 62.8
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 8.4e-220 768.1 1046 43.4
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 2.1e-218 763.5 655 60.9
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 4.8e-207 725.7 677 57.9
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.4e-206 724.2 655 58.0
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.1e-194 683.7 914 44.9
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.3e-193 680.2 1050 40.7
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.4e-182 644.4 963 40.1
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.0e-180 638.3 1052 39.9
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.5e-144 518.1 610 48.5
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.6e-136 490.7 389 67.4
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 3.6e-130 470.3 353 68.6
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.2e-125 455.3 566 47.7
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.1e-123 448.7 355 67.9
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 4.6e-109 400.2 460 54.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 6.9e-105 386.3 575 47.3
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 1.6e-93 348.6 261 71.3
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 1.6e-72 278.9 199 76.9
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 3.8e-71 274.2 233 67.0
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.7e-69 267.3 152 82.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 4.4e-67 260.8 225 64.0
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.3e-66 259.2 167 73.1
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 4.8e-66 257.3 152 77.6
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 2.0e-59 235.3 198 64.6
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.6e-59 235.0 875 26.4
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.2e-56 226.1 174 60.9
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.3e-42 179.5 114 71.1
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.4e-42 177.2 422 36.7
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 8.3e-42 176.8 270 47.8
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.4e-41 176.0 181 62.4
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 6.2e-37 160.6 144 60.4
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.9e-34 151.8 201 46.8
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 7.8e-32 143.7 103 72.8
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.0e-31 143.3 479 28.8
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.8e-26 124.8 113 55.8
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.9e-25 122.5 77 72.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 3.3e-22 111.7 130 52.3
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.8e-21 108.6 95 64.2
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.2e-17 95.1 80 58.8
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.1e-16 92.4 111 44.1
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.1e-16 92.4 111 44.1
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.6e-16 91.3 52 78.8
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.0e-15 90.1 79 54.4
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.3e-15 89.0 58 77.6
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 4.0e-12 78.2 69 49.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 9.0e-12 77.0 56 64.3
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.4e-09 69.7 71 49.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 1.8e-07 62.8 79 44.3


User provided reference genes

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