Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 3.1e-87 325.1 164 100.0
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 6.3e-72 274.2 164 79.9
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 2.7e-67 258.8 164 76.2
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 78.0
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 3.3e-65 251.9 164 73.2
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 74.4
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 8.2e-64 247.3 164 73.8
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 8.2e-64 247.3 164 71.3
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 70.7
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 73.8
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 72.6
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 72.0
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 72.0
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 70.7
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 69.5
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 72.0
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 70.1
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 72.6
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 67.7
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 70.1
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 70.1
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 70.7
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 71.3
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 70.1
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 68.9
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 69.5
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 68.9
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 68.3
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 68.3
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 70.1
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 68.9
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 67.7
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 69.5
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.3
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.9
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 68.9
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 70.1
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 65.2
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 68.3
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 68.3
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 2.1e-59 232.6 161 65.8
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 2.7e-59 232.3 164 69.5
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 2.7e-59 232.3 164 67.7
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 3.6e-59 231.9 164 67.7
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 68.9
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 67.1
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 67.1
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 69.5
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 1.0e-58 230.3 164 67.1
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.4e-58 229.9 160 68.1
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 1.8e-58 229.6 164 67.1
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 67.1
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 5.2e-58 228.0 164 68.3
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 6.8e-58 227.6 164 67.1
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 6.8e-58 227.6 160 68.8
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 6.8e-58 227.6 164 67.7
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 67.1
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 65.9
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 1.2e-57 226.9 164 67.1
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 1.2e-57 226.9 164 66.5
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 2.0e-57 226.1 164 68.3
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 2.0e-57 226.1 164 67.7
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 2.6e-57 225.7 160 66.2
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 2.6e-57 225.7 160 68.1
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 3.4e-57 225.3 164 65.2
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 3.4e-57 225.3 164 65.2
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 5.7e-57 224.6 164 68.3
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 7.5e-57 224.2 164 65.9
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.3e-56 223.4 188 60.6
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 1.3e-56 223.4 164 65.2
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 1.3e-56 223.4 164 64.6
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 1.7e-56 223.0 164 64.0
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 1.7e-56 223.0 164 64.0
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 1.7e-56 223.0 164 65.9
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 2.2e-56 222.6 173 61.8
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 64.0
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 66.5
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 65.9
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 65.9
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 4.8e-56 221.5 164 65.2
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 8.3e-56 220.7 185 59.5
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 8.3e-56 220.7 164 65.2
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 1.1e-55 220.3 164 65.2
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.4e-55 219.9 164 64.6
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 1.4e-55 219.9 164 64.6
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.8e-55 219.5 164 64.0
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 2.4e-55 219.2 164 64.6
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 4.1e-55 218.4 162 64.2
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 4.1e-55 218.4 164 64.0
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 5.4e-55 218.0 164 64.0
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 1.2e-54 216.9 164 62.8
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 3.5e-54 215.3 164 63.4
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 4.5e-54 214.9 164 62.2
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 4.5e-54 214.9 164 62.8
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 5.9e-54 214.5 193 56.5
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 1.3e-53 213.4 164 61.6
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 2.3e-53 212.6 158 66.5
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 6.5e-53 211.1 161 60.2
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 6.5e-53 211.1 164 62.8
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 7.2e-52 207.6 191 54.5
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 1.6e-51 206.5 164 59.1
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 2.8e-51 205.7 164 62.2
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 2.8e-51 205.7 164 60.4
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 3.6e-51 205.3 172 65.1
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 3.0e-50 202.2 169 60.9
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.4e-49 198.4 162 56.8
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 2.2e-48 196.1 171 57.3
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.3e-45 186.8 133 65.4
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.0e-41 172.9 221 46.6
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.4e-41 171.8 164 48.2
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 7.5e-41 171.0 170 51.2
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 7.5e-41 171.0 170 51.2
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.8e-39 166.4 132 59.1
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.6e-38 163.3 164 51.8
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 7.8e-38 161.0 176 49.4
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 9.5e-36 154.1 166 47.6
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 3.4e-33 145.6 117 62.4
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 7.5e-33 144.4 168 41.1
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 2.9e-32 142.5 160 45.6
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 8.3e-32 141.0 121 50.4
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 1.9e-31 139.8 94 73.4
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 3.5e-30 135.6 102 65.7
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.1e-28 130.6 158 45.6
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 7.3e-28 127.9 83 74.7
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 3.6e-27 125.6 82 74.4
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 1.1e-26 124.0 96 61.5
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 1.1e-26 124.0 83 69.9
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 6.8e-26 121.3 83 68.7
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 5.8e-25 118.2 99 58.6
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 3.2e-23 112.5 118 49.2
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 9.2e-23 110.9 104 61.5
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 1.2e-19 100.5 66 68.2
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 6.8e-18 94.7 119 37.0
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 1.2e-17 94.0 74 58.1
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 1.2e-14 84.0 57 61.4
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 2.1e-14 83.2 82 47.6
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 6.6e-13 78.2 45 77.8
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 1.6e-11 73.6 47 66.0
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 3.6e-11 72.4 47 66.0
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 4.7e-11 72.0 47 72.3
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 8.1e-11 71.2 51 62.7
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 4.0e-10 68.9 81 50.6
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 6.9e-10 68.2 46 60.9
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 4.4e-09 65.5 49 67.3


User provided reference genes

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