Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 6.3e-26 120.2 68 100.0
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 1.3e-15 85.9 65 78.5
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 5.0e-15 84.0 67 74.6
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.5e-14 82.4 61 77.0
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 4.2e-14 80.9 70 71.4
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 7.2e-14 80.1 66 72.7
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 7.2e-14 80.1 68 73.5
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 9.4e-14 79.7 71 69.0
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.2e-13 79.3 68 73.5
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 1.6e-13 79.0 66 74.2
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 2.1e-13 78.6 70 72.9
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 2.7e-13 78.2 70 71.4
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 6.1e-13 77.0 61 75.4
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 6.1e-13 77.0 66 71.2
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 1.8e-12 75.5 59 78.0
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 1.8e-12 75.5 67 67.2
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.8e-12 75.5 61 75.4
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 2.3e-12 75.1 54 79.6
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 3.0e-12 74.7 64 75.0
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.0e-12 74.7 67 68.7
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 4.0e-12 74.3 55 81.8
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 4.0e-12 74.3 66 69.7
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 5.2e-12 73.9 68 67.6
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 5.2e-12 73.9 67 73.1
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 5.2e-12 73.9 62 74.2
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 5.2e-12 73.9 61 72.1
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 6.8e-12 73.6 66 71.2
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 8.8e-12 73.2 60 75.0
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 8.8e-12 73.2 66 66.7
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 8.8e-12 73.2 70 70.0
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 8.8e-12 73.2 62 74.2
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.5e-11 72.4 69 68.1
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 4.4e-11 70.9 59 69.5
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 4.4e-11 70.9 59 69.5
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 7.5e-11 70.1 70 64.3
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 7.5e-11 70.1 67 67.2
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 7.5e-11 70.1 75 64.0
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 7.5e-11 70.1 69 66.7
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 9.8e-11 69.7 69 69.6
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.3e-10 69.3 48 81.2
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.3e-10 69.3 48 81.2
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 1.7e-10 68.9 67 64.2
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 2.2e-10 68.6 65 64.6
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 2.2e-10 68.6 63 68.3
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 2.8e-10 68.2 66 62.1
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 3.7e-10 67.8 57 70.2
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 4.8e-10 67.4 48 77.1
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 4.8e-10 67.4 56 76.8
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 6.3e-10 67.0 68 66.2
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 6.3e-10 67.0 47 85.1
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 6.3e-10 67.0 55 72.7
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 6.3e-10 67.0 61 65.6
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 1.1e-09 66.2 48 75.0
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.4e-09 65.9 63 69.8
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.4e-09 65.9 68 66.2
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 1.8e-09 65.5 58 69.0
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 1.8e-09 65.5 48 77.1
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.8e-09 65.5 58 72.4
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.8e-09 65.5 63 65.1
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.4e-09 65.1 50 78.0
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 4.1e-09 64.3 69 66.7
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 4.1e-09 64.3 68 66.2
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 4.1e-09 64.3 67 62.7
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 4.1e-09 64.3 48 79.2
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 7.0e-09 63.5 51 72.5
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 7.0e-09 63.5 49 77.6
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 7.0e-09 63.5 49 77.6
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 7.0e-09 63.5 63 63.5
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 9.1e-09 63.2 67 64.2
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 9.1e-09 63.2 67 64.2
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 9.1e-09 63.2 47 80.9
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 1.2e-08 62.8 61 67.2
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.6e-08 62.4 49 77.6
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 1.6e-08 62.4 71 62.0
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 2.0e-08 62.0 48 72.9
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 2.7e-08 61.6 61 67.2
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.5e-08 61.2 48 75.0
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 3.5e-08 61.2 55 69.1
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 4.5e-08 60.8 48 77.1
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 4.5e-08 60.8 47 74.5
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 4.5e-08 60.8 57 66.7
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 5.9e-08 60.5 50 74.0
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 7.7e-08 60.1 48 77.1
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.0e-07 59.7 45 80.0
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 1.0e-07 59.7 67 58.2
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 1.0e-07 59.7 56 67.9
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 1.3e-07 59.3 44 77.3
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 1.3e-07 59.3 64 64.1
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 1.3e-07 59.3 61 59.0
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 1.3e-07 59.3 66 59.1
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.7e-07 58.9 47 72.3
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 1.7e-07 58.9 42 78.6
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 1.7e-07 58.9 65 61.5
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 2.3e-07 58.5 61 60.7
Medtr8g013640 Medicago truncatula HOM05D005458 ORTHO05D005672 2.3e-07 58.5 60 61.7
TAR633G2004 Trochodendron aralioides HOM05D005458 ORTHO05D005672 2.9e-07 58.2 45 75.6
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 3.8e-07 57.8 45 73.3
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 5.0e-07 57.4 64 62.5
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 6.6e-07 57.0 55 67.3
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 6.6e-07 57.0 64 65.6
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 8.6e-07 56.6 62 61.3
Hma1.2p1_0187F.1_g082170 Hydrangea macrophylla HOM05D005458 ORTHO05D005672 8.6e-07 56.6 47 76.6
Cre06.g278238 Chlamydomonas reinhardtii HOM05D005458 ORTHO05D005672 1.1e-06 56.2 51 72.5
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.1e-06 56.2 56 62.5
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 1.5e-06 55.8 49 71.4
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.5e-06 55.8 49 69.4
Psat4g203440 Pisum sativum HOM05D005458 ORTHO05D005672 1.5e-06 55.8 61 59.0
Aa31LG8G10780 Aethionema arabicum HOM05D005458 ORTHO05D005672 1.9e-06 55.5 44 72.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 1.9e-06 55.5 48 72.9
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 1.9e-06 55.5 48 72.9
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 1.9e-06 55.5 48 72.9
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 2.5e-06 55.1 66 57.6
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 3.3e-06 54.7 42 78.6
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 3.3e-06 54.7 48 70.8
Actinidia39967 Actinidia chinensis HOM05D005458 ORTHO05D005672 5.5e-06 53.9 68 55.9
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 5.5e-06 53.9 57 56.1
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 7.2e-06 53.5 48 68.8


User provided reference genes

Program Settings