Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 1.3e-39 166.0 86 100.0
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 2.5e-35 151.8 84 90.5
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 2.5e-35 151.8 84 90.5
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 2.5e-35 151.8 84 90.5
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 2.5e-35 151.8 84 90.5
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 2.5e-35 151.8 84 90.5
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 2.5e-35 151.8 81 96.3
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 1.2e-34 149.4 86 90.7
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 1.2e-34 149.4 80 93.8
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.6e-34 149.1 79 94.9
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.6e-34 149.1 79 94.9
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 1.6e-34 149.1 86 90.7
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 1.6e-34 149.1 79 94.9
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 2.1e-34 148.7 80 92.5
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 2.1e-34 148.7 79 94.9
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 2.1e-34 148.7 79 94.9
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 2.1e-34 148.7 79 94.9
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 2.1e-34 148.7 80 92.5
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 3.6e-34 147.9 79 93.7
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 3.6e-34 147.9 79 93.7
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 3.6e-34 147.9 79 93.7
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 3.6e-34 147.9 79 93.7
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 3.6e-34 147.9 79 93.7
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 3.6e-34 147.9 79 93.7
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 3.6e-34 147.9 79 93.7
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 3.6e-34 147.9 79 93.7
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 3.6e-34 147.9 79 93.7
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 4.7e-34 147.5 79 93.7
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 4.7e-34 147.5 80 92.5
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 6.1e-34 147.1 80 91.2
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 6.1e-34 147.1 80 91.2
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 8.0e-34 146.7 79 92.4
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 1.0e-33 146.4 85 87.1
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 1.0e-33 146.4 79 92.4
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 1.4e-33 146.0 79 92.4
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 1.4e-33 146.0 78 94.9
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 1.4e-33 146.0 79 92.4
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 1.4e-33 146.0 79 93.7
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 1.8e-33 145.6 79 92.4
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 1.8e-33 145.6 79 92.4
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 2.3e-33 145.2 84 89.3
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 2.3e-33 145.2 84 89.3
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 2.3e-33 145.2 84 89.3
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 2.3e-33 145.2 84 89.3
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 2.3e-33 145.2 79 92.4
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 2.3e-33 145.2 79 91.1
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 2.3e-33 145.2 84 89.3
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 2.3e-33 145.2 79 92.4
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 2.3e-33 145.2 79 92.4
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 2.3e-33 145.2 79 92.4
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 2.3e-33 145.2 79 92.4
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 2.3e-33 145.2 79 92.4
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 3.0e-33 144.8 79 91.1
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 3.0e-33 144.8 79 92.4
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 3.9e-33 144.4 79 92.4
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 3.9e-33 144.4 79 92.4
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 3.9e-33 144.4 79 92.4
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 3.9e-33 144.4 79 91.1
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 5.2e-33 144.1 85 87.1
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 5.2e-33 144.1 85 87.1
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 5.2e-33 144.1 79 91.1
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 6.7e-33 143.7 79 91.1
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 6.7e-33 143.7 79 91.1
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 6.7e-33 143.7 79 91.1
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 6.7e-33 143.7 79 91.1
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 6.7e-33 143.7 81 88.9
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 8.8e-33 143.3 79 91.1
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 8.8e-33 143.3 79 91.1
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 8.8e-33 143.3 79 88.6
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 2.0e-32 142.1 79 91.1
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 2.0e-32 142.1 84 86.9
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 3.3e-32 141.4 79 91.1
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 4.4e-32 141.0 78 89.7
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 4.4e-32 141.0 84 85.7
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 4.4e-32 141.0 79 88.6
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 7.4e-32 140.2 79 86.1
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 2.2e-31 138.7 84 83.3
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 6.3e-31 137.1 77 88.3
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 3.1e-30 134.8 82 82.9
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 1.0e-28 129.8 85 82.4
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 1.0e-28 129.8 85 82.4
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 2.2e-28 128.6 79 79.7
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 6.5e-28 127.1 68 92.6
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 1.5e-27 125.9 71 87.3
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 1.9e-27 125.6 74 85.1
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 1.9e-27 125.6 73 89.0
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 5.5e-27 124.0 69 89.9
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 5.5e-27 124.0 73 84.9
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 2.1e-26 122.1 87 74.7
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 1.4e-25 119.4 69 88.4
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 2.3e-25 118.6 79 75.9
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 2.3e-25 118.6 79 75.9
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 2.3e-25 118.6 79 75.9
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 4.0e-25 117.9 79 75.9
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 5.2e-25 117.5 79 78.5
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 8.8e-25 116.7 79 74.7
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 1.2e-24 116.3 79 74.7
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 3.3e-24 114.8 91 70.3
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 3.3e-24 114.8 79 75.9
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 2.2e-20 102.1 77 68.8
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 5.0e-20 100.9 72 68.1
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 6.5e-20 100.5 76 61.8
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 2.0e-16 89.0 75 57.3
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 2.6e-16 88.6 79 62.0
FAN19G2569 Fragaria x ananassa HOM05D007087 ORTHO05D008968 9.8e-16 86.7 48 91.7
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 4.1e-14 81.3 60 70.0
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 5.4e-14 80.9 45 88.9
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.1e-11 73.2 65 60.0
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 1.1e-11 73.2 42 78.6
SEGI_40703 Sequoiadendron giganteum HOM05D007087 ORTHO05D008968 3.0e-09 65.1 64 40.6


User provided reference genes

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