Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 2365.5 1248 100.0
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1667.5 1244 71.4
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1587.4 1242 68.5
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1564.3 1242 66.4
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1496.1 1252 62.5
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1331.6 1251 58.5
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1302.3 1251 57.6
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1291.2 1255 57.8
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1290.4 986 67.2
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1284.6 1258 56.7
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1275.0 1257 56.1
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1267.7 1258 56.2
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1258.4 1253 57.6
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1244.2 1247 54.3
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1244.2 1262 55.2
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1241.9 1257 56.0
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1241.5 1246 55.3
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1236.5 1247 54.9
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1234.9 1252 54.7
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1225.7 1242 54.5
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1218.8 1241 53.9
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1218.0 1241 53.9
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1215.7 1246 54.9
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1212.6 1257 53.8
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1209.9 1247 55.9
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1206.0 1259 52.9
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1205.3 1241 53.5
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1204.5 1253 54.0
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1202.6 1246 54.0
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1197.2 1246 53.1
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1178.7 1261 52.7
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1176.0 1271 52.4
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1165.6 1257 52.0
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1160.6 1249 53.2
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1156.0 1267 51.4
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1152.1 1253 52.5
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1149.8 1255 52.4
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1149.0 1249 52.0
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1147.9 1242 52.6
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1147.5 1264 52.4
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1147.1 1253 52.3
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1146.3 1109 56.6
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1146.0 1221 53.6
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1141.7 1242 52.1
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1139.4 1266 51.3
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1139.0 1265 52.3
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1137.9 1249 50.4
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1137.9 1264 50.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1132.5 1215 55.1
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1128.6 1251 51.8
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1127.5 1244 51.7
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1126.7 1252 50.7
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1122.8 1259 50.4
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1116.3 1244 50.1
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1112.8 1261 51.3
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1111.7 1245 52.4
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1110.9 1255 50.5
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1108.6 1241 51.9
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1107.0 1242 50.1
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1105.1 1248 51.0
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1092.4 1263 50.8
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1088.9 1256 49.6
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1087.0 1243 50.0
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1086.6 1190 52.6
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1086.2 1156 51.9
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1083.2 1246 51.7
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1078.2 1260 48.7
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 8.5e-310 1067.4 1301 48.1
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 1.4e-309 1066.6 1249 48.8
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 7.9e-308 1060.8 1243 48.9
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 6.3e-305 1051.2 1254 47.9
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 8.2e-305 1050.8 1247 47.9
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 1.0e-302 1043.9 1005 57.4
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 5.0e-302 1041.6 1260 46.5
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 4.6e-300 1035.0 1222 50.5
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 6.1e-300 1034.6 1246 47.4
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 7.9e-300 1034.2 1244 47.9
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 3.3e-298 1028.9 1289 47.7
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 3.7e-297 1025.4 1245 47.5
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 1.4e-296 1023.5 1258 48.0
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 3.4e-295 1018.8 1268 48.7
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 3.2e-293 1012.3 1246 47.5
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 4.1e-288 995.3 930 58.1
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 6.9e-288 994.6 1250 47.3
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 8.5e-286 987.6 940 59.4
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 4.2e-285 985.3 1254 47.6
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 5.5e-285 984.9 1254 47.5
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 4.5e-271 938.7 861 59.0
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 5.9e-271 938.3 1256 46.1
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.3e-259 899.8 1247 43.6
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 1.3e-254 884.0 1042 48.1
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.0e-246 857.8 1209 43.3
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 6.0e-223 778.9 843 53.3
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 4.2e-216 756.1 1294 38.0
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 9.3e-216 755.0 942 48.5
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 1.6e-215 754.2 1001 47.2
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 3.0e-214 750.0 1234 40.0
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 4.0e-203 713.0 898 45.9
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 3.4e-202 709.9 1243 37.0
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.5e-170 604.7 769 44.2
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 7.7e-170 602.4 871 41.7
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 2.6e-165 587.4 1045 37.9
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.6e-162 577.4 569 53.8
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 3.5e-154 550.4 734 42.6
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 2.3e-150 537.7 722 43.4
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 6.8e-142 509.6 427 69.3
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.2e-135 488.8 636 43.9
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.3e-120 437.2 657 41.9
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 2.0e-109 401.7 358 61.2
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 8.4e-100 369.8 345 59.4
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 3.2e-99 367.9 338 60.9
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.3e-97 362.5 334 60.5
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 4.3e-88 330.9 236 72.0
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.3e-84 319.3 449 41.0
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.7e-81 306.6 670 31.9
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 9.6e-80 303.1 456 36.2
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 2.5e-75 288.5 371 44.2
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 1.2e-66 259.6 448 35.3
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-60 239.6 335 37.6
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 3.6e-58 231.5 400 38.5
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 9.4e-51 206.8 292 41.1
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 8.2e-47 193.7 376 37.2
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.6e-45 189.5 295 37.3
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 5.9e-29 134.4 311 32.5
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.0e-28 133.7 169 45.6
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.5e-19 102.4 116 46.6
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 4.3e-19 101.7 199 37.2
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 1.6e-18 99.8 412 27.7
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 1.0e-17 97.1 116 44.8
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 2.0e-16 92.8 138 41.3
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 1.7e-15 89.7 119 42.0
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 2.2e-15 89.4 119 42.0
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 2.5e-11 75.9 60 60.0


User provided reference genes

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