Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16330 Selenicereus undatus HOM05D007198 ORTHO05D008969 4.8e-59 231.1 129 100.0
AUR62001938 Chenopodium quinoa HOM05D000362 ORTHO05D008969 1.6e-14 83.2 58 75.9
RcHm_v2.0_Chr2g0105351 Rosa chinensis HOM05D007198 ORTHO05D008969 1.6e-14 83.2 47 87.2
AUR62003873 Chenopodium quinoa HOM05D007198 ORTHO05D008969 2.8e-14 82.4 47 89.4
Sc16g0004690 Simmondsia chinensis HOM05D007198 ORTHO05D008969 2.8e-14 82.4 47 87.2
FvH4_1g15950 Fragaria vesca HOM05D007198 ORTHO05D008969 6.2e-14 81.3 47 85.1
EL10Ac6g15754 Beta vulgaris HOM05D007198 ORTHO05D008969 1.1e-13 80.5 46 89.1
MD02G1301600 Malus domestica HOM05D007198 ORTHO05D008969 3.1e-13 79.0 47 80.9
QL06p041746 Quercus lobata HOM05D007198 ORTHO05D008969 4.0e-13 78.6 47 80.9
Nitab4.5_0001034g0170 Nicotiana tabacum HOM05D007198 ORTHO05D008969 8.9e-13 77.4 47 80.9
CiPaw.01G018700 Carya illinoinensis HOM05D007198 ORTHO05D008969 1.2e-12 77.0 47 80.9
Cc07_g05960 Coffea canephora HOM05D007198 ORTHO05D008969 1.2e-12 77.0 49 79.6
Dinv39859 Davidia involucrata HOM05D007198 ORTHO05D008969 1.2e-12 77.0 47 80.9
ECA232G0395 Erigeron canadensis HOM05D007198 ORTHO05D008969 1.2e-12 77.0 47 80.9
MD10G1272600 Malus domestica HOM05D007198 ORTHO05D008969 1.2e-12 77.0 47 80.9
MD14G1074900 Malus domestica HOM05D007198 ORTHO05D008969 1.2e-12 77.0 55 70.9
HanXRQChr07g0191591 Helianthus annuus HOM05D007198 ORTHO05D008969 1.5e-12 76.6 47 78.7
Haze_15409 Corylus avellana HOM05D007198 ORTHO05D008969 2.0e-12 76.3 48 77.1
Hma1.2p1_0461F.1_g157845 Hydrangea macrophylla HOM05D007198 ORTHO05D008969 2.0e-12 76.3 47 83.0
Prupe.7G134300 Prunus persica HOM05D007198 ORTHO05D008969 2.0e-12 76.3 47 78.7
Solyc02g090750.4 Solanum lycopersicum HOM05D007198 ORTHO05D008969 2.0e-12 76.3 47 80.9
Sopen02g035380 Solanum pennellii HOM05D007198 ORTHO05D008969 2.0e-12 76.3 47 80.9
arahy.Tifrunner.gnm1.ann1.VZ1EEZ Arachis hypogaea HOM05D007198 ORTHO05D008969 2.6e-12 75.9 48 70.8
Cpa.g.sc55.159 Carica papaya HOM05D007198 ORTHO05D008969 2.6e-12 75.9 47 80.9
Lj4A144T46 Lonicera japonica HOM05D007198 ORTHO05D008969 2.6e-12 75.9 47 80.9
arahy.Tifrunner.gnm1.ann1.ETA9G6 Arachis hypogaea HOM05D007198 ORTHO05D008969 3.4e-12 75.5 48 72.9
CSS0000534 Camellia sinensis var. sinensis HOM05D007198 ORTHO05D008969 3.4e-12 75.5 47 78.7
CSS0048673 Camellia sinensis var. sinensis HOM05D007198 ORTHO05D008969 3.4e-12 75.5 47 78.7
Eucgr.H01658 Eucalyptus grandis HOM05D007198 ORTHO05D008969 3.4e-12 75.5 82 53.7
Os10g0388900 Oryza sativa ssp. japonica HOM05D007198 ORTHO05D008969 3.4e-12 75.5 109 46.8
PGSC0003DMG402015781 Solanum tuberosum HOM05D007198 ORTHO05D008969 3.4e-12 75.5 47 80.9
TAR628G0194 Trochodendron aralioides HOM05D007198 ORTHO05D008969 3.4e-12 75.5 47 78.7
Atru.BG.94.p Acer truncatum HOM05D007198 ORTHO05D008969 4.4e-12 75.1 50 74.0
Aa31LG6G13950 Aethionema arabicum HOM05D007198 ORTHO05D008969 4.4e-12 75.1 49 75.5
Aqoxy6G01332 Aquilegia oxysepala HOM05D007198 ORTHO05D008969 4.4e-12 75.1 47 78.7
Peaxi162Scf00450g00621 Petunia axillaris HOM05D007198 ORTHO05D008969 4.4e-12 75.1 77 58.4
DCAR_010899 Daucus carota HOM05D007198 ORTHO05D008969 5.8e-12 74.7 47 78.7
Duzib264G0904 Durio zibethinus HOM05D007198 ORTHO05D008969 5.8e-12 74.7 47 78.7
Thhalv10026229m.g Eutrema salsugineum HOM05D007198 ORTHO05D008969 5.8e-12 74.7 47 76.6
Gohir.A12G069000 Gossypium hirsutum HOM05D007198 ORTHO05D008969 5.8e-12 74.7 47 78.7
VMungo1215G1587 Vigna mungo HOM05D007198 ORTHO05D008969 5.8e-12 74.7 48 72.9
Actinidia16498 Actinidia chinensis HOM05D007198 ORTHO05D008969 7.5e-12 74.3 45 82.2
CANSAT01G0326 Cannabis sativa HOM05D007198 ORTHO05D008969 7.5e-12 74.3 47 76.6
COL.COLO4_11404 Corchorus olitorius HOM05D007198 ORTHO05D008969 7.5e-12 74.3 47 78.7
Lsat_1_v5_gn_4_166740 Lactuca sativa HOM05D007198 ORTHO05D008969 7.5e-12 74.3 47 76.6
MD02G1301800 Malus domestica HOM05D007198 ORTHO05D008969 7.5e-12 74.3 47 78.7
Nn1g04876 Nelumbo nucifera HOM05D007198 ORTHO05D008969 7.5e-12 74.3 47 76.6
FAN19G3022 Fragaria x ananassa HOM05D007198 ORTHO05D008969 9.8e-12 73.9 55 72.7
Glyma.01G185700 Glycine max HOM05D007198 ORTHO05D008969 9.8e-12 73.9 48 72.9
Manes.12G101406 Manihot esculenta HOM05D007198 ORTHO05D008969 9.8e-12 73.9 47 76.6
Potri.007G043200 Populus trichocarpa HOM05D007198 ORTHO05D008969 9.8e-12 73.9 47 74.5
Carub.0007s0322 Capsella rubella HOM05D007198 ORTHO05D008969 1.3e-11 73.6 77 57.1
Gohir.D12G068800 Gossypium hirsutum HOM05D007198 ORTHO05D008969 1.3e-11 73.6 48 79.2
Gorai.008G075300 Gossypium raimondii HOM05D007198 ORTHO05D008969 1.3e-11 73.6 45 82.2
Medtr5g017490 Medicago truncatula HOM05D007198 ORTHO05D008969 1.3e-11 73.6 48 72.9
PSO170G6483 Papaver somniferum HOM05D007198 ORTHO05D008969 1.3e-11 73.6 47 74.5
PSO210G2416 Papaver somniferum HOM05D007198 ORTHO05D008969 1.3e-11 73.6 47 74.5
Phvul.002G019200 Phaseolus vulgaris HOM05D007198 ORTHO05D008969 1.3e-11 73.6 48 70.8
Rhsim08G0101100 Rhododendron simsii HOM05D007198 ORTHO05D008969 1.3e-11 73.6 47 78.7
Psat2g167000 Pisum sativum HOM05D007198 ORTHO05D008969 1.7e-11 73.2 48 72.9
Lj2g0004070 Lotus japonicus HOM05D007198 ORTHO05D008969 2.2e-11 72.8 48 72.9
MSTRG.2886 Avicennia marina HOM05D007198 ORTHO05D008969 2.9e-11 72.4 47 74.5
MELO3C007557.2 Cucumis melo HOM05D007198 ORTHO05D008969 2.9e-11 72.4 47 74.5
TPR.G21270 Trifolium pratense HOM05D007198 ORTHO05D008969 2.9e-11 72.4 48 72.9
BcaC01g00428 Brassica carinata HOM05D007198 ORTHO05D008969 3.7e-11 72.0 47 74.5
BcaB03g12356 Brassica carinata HOM05D007198 ORTHO05D008969 4.9e-11 71.6 47 74.5
CARHR245490 Cardamine hirsuta HOM05D007198 ORTHO05D008969 4.9e-11 71.6 77 54.5
ClCG01G016780 Citrullus lanatus HOM05D007198 ORTHO05D008969 4.9e-11 71.6 47 74.5
CsaV3_6G043210 Cucumis sativus L. HOM05D007198 ORTHO05D008969 4.9e-11 71.6 47 74.5
BolC3t20215H Brassica oleracea HOM05D007198 ORTHO05D008969 6.4e-11 71.2 47 74.5
BraA08t34210Z Brassica rapa HOM05D007198 ORTHO05D008969 6.4e-11 71.2 47 74.5
CAN.G836.78 Capsicum annuum HOM05D007198 ORTHO05D008969 6.4e-11 71.2 47 76.6
Sabra07G0038100 Salix brachista HOM05D007198 ORTHO05D008969 6.4e-11 71.2 47 72.3
GSVIVG01022140001 Vitis vinifera HOM05D007198 ORTHO05D008969 8.3e-11 70.9 47 72.3
MBI02_g02990_MAGBIO Magnolia biondii HOM05D007198 ORTHO05D008969 1.1e-10 70.5 47 70.2
Sp7g34740 Schrenkiella parvula HOM05D007198 ORTHO05D008969 1.1e-10 70.5 47 72.3
AL7G13790 Arabidopsis lyrata HOM05D007198 ORTHO05D008969 1.4e-10 70.1 47 70.2
Sed0013660 Sechium edule HOM05D007198 ORTHO05D008969 1.4e-10 70.1 47 72.3
Zm00001eb223810 Zea mays HOM05D007198 ORTHO05D008969 1.4e-10 70.1 77 54.5
AT4G37020 Arabidopsis thaliana HOM05D007198 ORTHO05D008969 1.9e-10 69.7 47 70.2
TWI09G1591 Tripterygium wilfordii HOM05D007198 ORTHO05D008969 1.9e-10 69.7 47 72.3
Migut.H00436 Erythranthe guttata HOM05D007198 ORTHO05D008969 2.4e-10 69.3 47 72.3
Lalb_Chr09g0323151 Lupinus albus HOM05D007198 ORTHO05D008969 2.4e-10 69.3 48 70.8
SGA_v2.0_scaffold15G07292 Striga asiatica HOM05D007198 ORTHO05D008969 3.2e-10 68.9 47 70.2
CDE04G0918 Ceratophyllum demersum HOM05D007198 ORTHO05D008969 4.1e-10 68.6 47 70.2
ATR0753G086 Amborella trichopoda HOM05D007198 ORTHO05D008969 5.4e-10 68.2 47 68.1
Ciclev10026429m.g Citrus clementina HOM05D007198 ORTHO05D008969 1.2e-09 67.0 47 70.2
PGR102G0107 Punica granatum HOM05D007198 ORTHO05D008969 1.2e-09 67.0 47 68.1
Glyma.11G056400 Glycine max HOM05D007198 ORTHO05D008969 6.6e-08 61.2 48 64.6


User provided reference genes

Program Settings