Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 1.7e-297 1025.4 580 100.0
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 8.5e-188 661.0 492 81.3
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 1.8e-182 643.3 476 79.0
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 9.4e-179 630.9 478 79.3
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 1.8e-177 626.7 482 77.0
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 4.4e-176 622.1 478 75.1
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 6.3e-175 618.2 553 67.6
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 4.1e-174 615.5 513 72.7
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.3e-174 615.1 478 75.3
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 7.7e-173 611.3 481 77.1
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.7e-172 610.1 478 74.5
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 6.5e-172 608.2 481 75.3
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 3.2e-171 605.9 480 75.2
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 4.2e-171 605.5 504 71.6
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 9.4e-171 604.4 478 75.9
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 1.6e-170 603.6 480 75.8
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 1.6e-170 603.6 492 75.2
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 1.6e-170 603.6 479 74.7
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 1.8e-169 600.1 514 70.0
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 1.5e-168 597.0 479 73.1
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 1.7e-167 593.6 479 73.7
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 2.2e-167 593.2 480 74.8
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 2.8e-167 592.8 450 77.8
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 6.3e-167 591.7 478 74.5
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 8.2e-167 591.3 478 73.8
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.1e-166 589.3 481 73.8
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 7.0e-166 588.2 480 73.5
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.6e-165 587.0 479 74.9
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 2.0e-165 586.6 505 69.7
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 2.6e-165 586.3 480 73.8
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 1.3e-164 583.9 476 70.8
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 4.2e-163 578.9 481 73.2
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 7.2e-163 578.2 481 74.4
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 7.2e-163 578.2 479 73.1
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 1.2e-162 577.4 483 71.8
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.6e-162 577.0 493 70.6
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 4.7e-162 575.5 450 73.6
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 6.1e-162 575.1 493 70.4
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.8e-161 573.5 477 73.0
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 3.0e-161 572.8 446 77.1
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 6.8e-161 571.6 478 73.8
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 6.8e-161 571.6 449 72.4
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 2.0e-160 570.1 449 72.4
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 5.7e-160 568.5 476 74.2
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 2.8e-159 566.2 481 73.2
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 9.1e-158 561.2 533 64.7
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 2.0e-157 560.1 449 73.5
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 3.5e-157 559.3 449 73.5
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 1.7e-156 557.0 502 68.3
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 2.2e-156 556.6 477 74.0
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 2.2e-156 556.6 480 72.9
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 5.0e-156 555.4 481 73.4
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 1.1e-155 554.3 502 67.3
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 1.9e-155 553.5 479 68.9
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 3.2e-155 552.7 478 71.8
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 5.5e-155 552.0 481 69.6
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 5.5e-155 552.0 450 70.2
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 6.1e-154 548.5 576 64.6
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 8.0e-154 548.1 480 71.2
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 1.8e-153 547.0 480 70.4
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 2.3e-153 546.6 480 70.8
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 3.0e-153 546.2 478 73.4
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 3.0e-153 546.2 482 69.9
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 5.2e-153 545.4 481 68.0
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 6.8e-153 545.0 510 65.5
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 3.4e-152 542.7 494 66.8
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 4.4e-152 542.3 470 69.4
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 1.3e-151 540.8 449 73.7
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 2.8e-151 539.7 480 68.3
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 4.1e-150 535.8 478 68.0
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 7.0e-150 535.0 479 68.7
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 2.7e-149 533.1 479 69.7
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 3.5e-149 532.7 478 69.0
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 1.0e-148 531.2 447 69.6
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 4.2e-147 525.8 448 72.8
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.0e-145 521.2 485 63.5
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 2.3e-145 520.0 457 68.9
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 7.5e-144 515.0 500 71.0
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 3.2e-142 509.6 447 68.5
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 3.5e-141 506.1 477 64.8
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 3.5e-141 506.1 374 78.9
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 2.3e-137 493.4 460 64.8
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 5.2e-137 492.3 373 74.0
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 2.2e-135 486.9 374 74.3
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 5.4e-134 482.3 477 62.1
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 2.7e-133 479.9 481 63.0
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 1.5e-131 474.2 375 74.7
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.2e-128 464.5 388 71.4
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 3.5e-125 453.0 478 58.4
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 1.3e-119 434.5 503 58.1
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.1e-117 427.2 391 67.8
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 1.2e-114 417.9 447 63.5
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 1.0e-108 398.3 340 77.9
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 5.3e-105 386.0 377 68.4
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 3.5e-101 373.2 467 52.0
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 4.3e-99 366.3 345 70.1
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 1.3e-98 364.8 481 49.7
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 2.8e-98 363.6 306 72.5
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 2.0e-96 357.5 320 70.3
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 5.8e-96 355.9 309 75.7
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 4.9e-95 352.8 338 68.0
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 3.9e-92 343.2 459 55.1
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 2.0e-88 330.9 268 74.6
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 4.5e-88 329.7 474 50.0
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 3.8e-79 300.1 463 47.5
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 3.9e-76 290.0 333 58.6
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.4e-70 271.6 370 55.1
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 3.2e-70 270.4 234 69.2
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 4.3e-67 260.0 264 63.3
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 5.3e-65 253.1 228 72.8
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 2.6e-64 250.8 228 72.8
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 4.2e-62 243.4 303 55.4
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 2.2e-58 231.1 125 89.6
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 4.8e-58 229.9 154 74.7
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.4e-57 228.4 125 88.8
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 7.0e-57 226.1 250 53.6
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.2e-55 221.1 348 47.4
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 1.3e-50 205.3 125 82.4
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 2.4e-49 201.1 480 44.6
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 7.0e-41 172.9 471 35.7
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.9e-39 167.5 84 94.0
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 2.3e-31 141.4 158 56.3
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 2.4e-25 121.3 141 53.2
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 3.5e-24 117.5 108 67.6
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 1.7e-23 115.2 104 63.5
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 3.0e-23 114.4 66 84.8
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.9e-23 114.0 72 76.4
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.2e-21 109.0 66 80.3
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 4.7e-21 107.1 105 60.0
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 9.8e-19 99.4 64 79.7
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 6.4e-18 96.7 87 64.4
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 1.9e-17 95.1 89 59.6
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 2.0e-16 91.7 382 28.5
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.0e-15 87.8 77 70.1
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 8.1e-13 79.7 50 80.0
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 3.7e-10 70.9 72 63.9
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 2.4e-09 68.2 293 30.7
Actinidia12052 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.4e-09 67.0 198 34.3


User provided reference genes

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