Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 0.0e+00 1192.6 600 100.0
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 6.4e-239 830.9 572 72.6
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 5.4e-238 827.8 572 72.7
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 2.8e-226 788.9 572 68.0
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 5.3e-217 758.1 574 65.9
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 2.6e-216 755.7 574 65.2
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 4.5e-216 755.0 574 66.0
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 1.7e-215 753.1 576 66.3
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 7.9e-213 744.2 575 64.7
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 2.3e-212 742.7 575 64.7
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.9e-211 739.6 574 63.6
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 3.3e-211 738.8 575 65.6
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 5.6e-211 738.0 574 63.4
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 9.6e-211 737.3 574 64.8
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 2.1e-210 736.1 575 65.0
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.7e-210 735.3 576 65.8
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 4.8e-210 734.9 575 64.2
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.1e-209 732.3 576 65.5
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 5.3e-209 731.5 575 63.8
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 1.3e-207 726.9 576 64.9
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.7e-207 726.5 576 64.8
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 9.3e-206 720.7 574 65.2
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.2e-205 720.3 573 62.8
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 3.5e-205 718.8 576 64.8
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.8e-204 716.5 575 64.2
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 3.3e-203 712.2 586 63.5
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 4.3e-203 711.8 575 62.4
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 5.6e-203 711.4 576 64.1
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.3e-202 710.3 572 62.1
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 4.8e-202 708.4 576 62.5
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 5.3e-201 704.9 575 62.3
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 2.6e-200 702.6 572 62.9
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 2.6e-200 702.6 574 61.3
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 1.0e-199 700.7 575 62.4
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 2.9e-199 699.1 575 62.1
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 1.9e-198 696.4 573 61.3
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 5.5e-198 694.9 571 60.8
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 7.1e-198 694.5 575 61.9
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 4.6e-197 691.8 576 62.3
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 1.9e-195 686.4 575 61.6
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 3.3e-195 685.6 573 60.7
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 5.7e-195 684.9 574 60.5
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 8.2e-194 681.0 574 59.8
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.4e-193 680.2 568 61.1
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.0e-192 676.4 601 58.6
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 3.4e-192 675.6 575 62.1
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.3e-191 673.7 575 61.4
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 1.4e-190 670.2 576 61.3
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 1.4e-190 670.2 577 57.9
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 2.5e-190 669.5 606 57.6
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 2.5e-190 669.5 575 60.3
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 2.5e-190 669.5 572 59.3
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 2.5e-190 669.5 576 60.2
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 4.2e-190 668.7 575 60.2
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 2.1e-189 666.4 576 60.8
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 3.6e-189 665.6 572 59.8
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 4.6e-189 665.2 574 60.5
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 1.0e-188 664.1 596 58.1
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 1.8e-188 663.3 574 59.6
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 3.9e-188 662.1 572 58.9
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 5.1e-188 661.8 572 58.7
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 8.8e-188 661.0 575 57.2
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 2.5e-187 659.4 572 58.6
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 4.3e-187 658.7 572 58.6
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 6.3e-186 654.8 573 59.3
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 5.3e-185 651.7 596 56.5
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 3.4e-184 649.0 573 58.1
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 1.0e-183 647.5 577 58.2
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.9e-182 643.3 576 59.7
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 3.2e-182 642.5 577 58.4
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 2.1e-181 639.8 574 59.8
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 2.1e-181 639.8 574 59.8
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 6.7e-180 634.8 573 58.5
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 2.0e-179 633.3 577 58.1
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 3.1e-177 625.9 574 58.7
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 3.1e-177 625.9 574 58.7
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 4.1e-177 625.5 574 58.7
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 5.9e-176 621.7 600 55.5
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.6e-173 613.6 576 55.9
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 4.4e-171 605.5 514 60.3
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 6.3e-170 601.7 645 50.9
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 1.7e-167 593.6 573 52.9
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 2.5e-166 589.7 548 58.6
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 1.2e-165 587.4 502 60.4
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 5.2e-164 582.0 549 55.4
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 8.8e-164 581.3 572 54.0
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 5.7e-163 578.6 494 60.7
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.3e-162 577.4 529 56.7
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 3.8e-159 565.8 519 56.1
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.6e-157 560.5 429 66.2
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 4.0e-156 555.8 476 60.9
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 6.8e-156 555.1 552 53.4
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 3.3e-150 536.2 680 45.4
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.4e-147 526.2 449 59.9
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 8.3e-146 521.5 426 62.0
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.9e-143 513.1 394 63.2
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 4.0e-140 502.7 552 47.6
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 1.7e-135 487.3 394 61.9
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.5e-134 483.4 577 47.7
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 4.3e-134 482.6 498 54.6
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.9e-127 459.5 472 53.4
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.8e-125 453.4 457 52.7
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 6.4e-122 442.2 356 61.2
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 1.6e-120 437.6 604 40.1
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.6e-117 426.4 368 61.7
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 1.3e-109 401.4 584 40.9
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 6.2e-109 399.1 573 41.0
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 6.6e-103 379.0 317 58.0
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.5e-102 377.1 474 48.5
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 4.5e-59 233.4 245 50.2
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.5e-57 228.4 382 38.0
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 1.1e-54 218.8 276 45.3
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 1.5e-54 218.4 208 56.7
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 2.2e-53 214.5 526 31.2
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 5.0e-42 176.8 159 56.0
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 7.7e-35 152.9 457 27.4
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 2.3e-34 151.4 152 52.6
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 1.6e-32 145.2 99 66.7
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 2.0e-30 138.3 131 55.0
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 2.2e-29 134.8 242 37.2
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 2.2e-29 134.8 428 25.9
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 1.1e-28 132.5 121 51.2
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 1.6e-27 128.6 74 74.3
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 3.6e-24 117.5 115 55.7
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 3.6e-24 117.5 115 55.7
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 3.5e-19 100.9 120 50.0
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.5e-17 95.5 379 22.7
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.9e-17 95.1 116 48.3
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.9e-17 95.1 73 67.1
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 3.6e-16 90.9 52 82.7
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.3e-15 88.2 93 55.9
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-14 83.2 68 60.3
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 1.7e-13 82.0 83 55.4
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.1e-09 69.3 45 71.1
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.5e-09 68.2 51 60.8
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 4.7e-08 63.9 120 35.0


User provided reference genes

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