Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.7e-145 519.2 255 100.0
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 2.6e-96 355.9 222 74.3
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 3.3e-96 355.5 220 75.9
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 3.3e-96 355.5 237 71.3
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 5.7e-96 354.8 218 75.7
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 9.7e-96 354.0 218 78.4
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 1.7e-95 353.2 220 75.5
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 2.8e-95 352.4 216 74.5
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 4.1e-94 348.6 218 74.3
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 4.1e-94 348.6 218 74.3
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 9.1e-94 347.4 218 72.9
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.2e-93 347.1 222 73.0
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.6e-93 346.7 214 76.6
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 2.6e-93 345.9 237 69.2
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 4.5e-93 345.1 218 73.4
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 5.9e-93 344.7 221 71.5
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 5.9e-93 344.7 252 68.7
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 7.7e-93 344.4 219 75.3
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 7.7e-93 344.4 220 73.2
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 7.7e-93 344.4 218 73.4
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.0e-92 344.0 216 74.5
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.3e-92 343.6 216 75.9
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 8.5e-92 340.9 216 74.1
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.1e-91 340.5 211 73.5
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.5e-91 340.1 228 69.3
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.9e-91 339.7 219 74.9
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.2e-91 339.0 220 73.2
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 3.2e-91 339.0 211 73.9
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 5.5e-91 338.2 211 73.9
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 2.7e-90 335.9 220 72.3
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 6.1e-90 334.7 218 69.7
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 2.3e-89 332.8 216 71.3
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 3.0e-89 332.4 212 73.6
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.6e-88 329.3 217 71.4
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 3.4e-88 328.9 216 72.2
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 5.7e-88 328.2 220 69.5
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.7e-87 326.6 213 70.9
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 2.8e-87 325.9 218 70.2
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 3.7e-87 325.5 211 71.1
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 4.8e-87 325.1 220 69.1
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 1.1e-86 323.9 218 69.7
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 1.8e-86 323.2 211 71.1
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 4.1e-86 322.0 214 71.0
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 5.3e-86 321.6 221 69.2
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 7.0e-86 321.2 208 73.1
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.2e-85 320.5 221 70.1
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.2e-85 320.5 225 70.2
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.6e-85 320.1 217 68.7
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.6e-85 320.1 221 69.7
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.5e-85 318.9 218 71.1
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 4.5e-85 318.5 208 71.2
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.9e-85 318.2 225 66.7
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 5.9e-85 318.2 212 70.3
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 7.7e-85 317.8 210 70.0
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.3e-84 317.0 210 71.4
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 2.9e-84 315.8 218 66.5
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 5.0e-84 315.1 218 66.1
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.1e-83 313.9 216 68.5
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 1.5e-83 313.5 205 70.7
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 2.5e-83 312.8 216 67.6
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 2.5e-83 312.8 205 71.7
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 3.2e-83 312.4 218 67.9
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 4.2e-83 312.0 218 68.3
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 4.2e-83 312.0 208 70.7
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 5.5e-83 311.6 216 67.6
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 7.2e-83 311.2 218 66.1
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 7.2e-83 311.2 214 66.4
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 9.4e-83 310.8 218 67.4
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.2e-82 310.5 234 65.0
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 1.2e-82 310.5 216 66.2
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.2e-82 310.5 210 67.1
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.6e-82 310.1 205 69.8
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.1e-82 309.7 238 61.3
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 2.1e-82 309.7 214 68.2
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 2.1e-82 309.7 218 67.9
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 2.1e-82 309.7 218 67.9
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.1e-82 309.7 247 61.1
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 2.7e-82 309.3 216 66.7
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 2.7e-82 309.3 216 66.2
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 4.7e-82 308.5 216 64.8
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 4.7e-82 308.5 221 66.5
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.7e-82 308.5 205 70.2
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 8.0e-82 307.8 216 66.7
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 8.0e-82 307.8 206 72.3
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 1.8e-81 306.6 218 66.5
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.8e-81 306.6 221 66.5
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 3.0e-81 305.8 218 66.5
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.7e-79 300.1 208 66.8
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.2e-79 299.7 225 62.7
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 1.1e-78 297.4 209 65.6
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 4.1e-78 295.4 225 62.2
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.6e-77 293.5 237 58.6
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.0e-76 290.8 178 75.3
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 2.3e-76 289.7 215 63.7
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.9e-75 286.6 219 61.6
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.2e-74 283.9 197 67.0
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 3.6e-74 282.3 213 62.0
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 6.1e-74 281.6 191 65.4
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.0e-73 280.8 219 61.2
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 3.0e-73 279.3 213 61.0
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 4.4e-72 275.4 235 60.0
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.7e-72 275.0 208 59.6
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 6.3e-71 271.6 198 65.2
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 1.4e-70 270.4 211 58.8
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 9.2e-70 267.7 205 61.0
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 7.8e-69 264.6 197 63.5
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.9e-68 262.7 186 69.9
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.1e-67 260.8 204 58.8
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.0e-65 252.3 204 57.8
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 4.9e-63 245.4 204 56.9
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 4.1e-62 242.3 144 77.8
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.0e-62 241.5 170 66.5
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 3.5e-61 239.2 222 51.8
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 1.3e-60 237.3 207 50.7
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 6.6e-60 235.0 147 70.7
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.5e-59 233.8 212 53.3
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.8e-57 226.9 227 49.3
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.6e-56 223.0 133 78.2
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.2e-55 219.9 144 68.1
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.4e-54 216.5 193 51.8
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.9e-52 209.1 242 48.3
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 7.3e-51 204.9 126 72.2
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 6.2e-50 201.8 199 52.3
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.3e-47 194.1 170 54.1
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 4.1e-46 189.1 207 44.4
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-44 184.1 163 51.5
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.4e-40 169.1 227 40.1
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.0e-37 158.7 111 66.7
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.1e-33 147.9 110 62.7
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.2e-29 134.4 77 74.0
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 8.7e-28 128.3 230 35.2
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.9e-27 127.1 203 36.5
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.4e-25 120.2 212 38.2
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 9.9e-24 114.8 72 75.0
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.3e-23 114.4 138 47.1
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 2.4e-22 110.2 76 69.7
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 1.9e-19 100.5 214 27.6
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.5e-19 100.1 66 66.7
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 7.4e-19 98.6 211 31.3
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 4.5e-16 89.4 116 43.1
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 4.5e-16 89.4 116 43.1
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.2e-15 87.0 52 76.9
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 2.9e-15 86.7 116 41.4
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.4e-14 84.3 53 69.8
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 7.9e-13 78.6 182 27.5
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.3e-12 77.8 109 45.0
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.0e-12 76.6 208 26.0
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 8.7e-12 75.1 84 45.2
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 8.2e-10 68.6 40 75.0
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 4.1e-09 66.2 47 63.8
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 5.8e-08 62.4 82 43.9
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 5.8e-08 62.4 162 25.9
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 1.7e-07 60.8 82 42.7
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 4.2e-06 56.2 220 21.4
CAN.G1148.3 Capsicum annuum HOM05D001556 ORTHO05D001505 5.5e-06 55.8 68 48.5


User provided reference genes

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