Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.6e-39 164.5 83 100.0
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.2e-18 96.3 50 90.0
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 1.2e-18 96.3 50 90.0
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.2e-18 96.3 50 90.0
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.2e-18 96.3 50 90.0
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 2.0e-18 95.5 50 90.0
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 2.0e-18 95.5 50 90.0
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 2.0e-18 95.5 50 88.0
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.0e-18 95.5 50 90.0
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 2.7e-18 95.1 50 90.0
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.7e-18 95.1 50 90.0
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 2.7e-18 95.1 50 90.0
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.7e-18 95.1 50 90.0
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 2.7e-18 95.1 51 86.3
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 2.7e-18 95.1 50 88.0
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 2.7e-18 95.1 50 88.0
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 2.7e-18 95.1 50 88.0
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 3.5e-18 94.7 52 86.5
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 4.5e-18 94.4 50 88.0
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 5.9e-18 94.0 50 86.0
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 5.9e-18 94.0 50 88.0
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 5.9e-18 94.0 50 88.0
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 7.7e-18 93.6 50 86.0
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 7.7e-18 93.6 50 88.0
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 7.7e-18 93.6 50 88.0
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 7.7e-18 93.6 50 88.0
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 7.7e-18 93.6 50 88.0
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 7.7e-18 93.6 50 88.0
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.0e-17 93.2 52 84.6
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 1.0e-17 93.2 50 88.0
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.0e-17 93.2 60 78.3
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.3e-17 92.8 50 86.0
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.3e-17 92.8 53 83.0
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.3e-17 92.8 50 86.0
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.3e-17 92.8 50 86.0
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.3e-17 92.8 50 86.0
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.3e-17 92.8 50 86.0
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.3e-17 92.8 50 88.0
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.3e-17 92.8 50 88.0
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.3e-17 92.8 50 88.0
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.7e-17 92.4 50 86.0
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 1.7e-17 92.4 50 86.0
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.7e-17 92.4 50 84.0
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.7e-17 92.4 50 86.0
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.7e-17 92.4 50 86.0
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.7e-17 92.4 50 86.0
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 1.7e-17 92.4 50 84.0
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.7e-17 92.4 50 84.0
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 2.2e-17 92.0 50 82.0
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.2e-17 92.0 50 86.0
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 2.2e-17 92.0 50 84.0
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 2.9e-17 91.7 50 86.0
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 2.9e-17 91.7 50 84.0
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 2.9e-17 91.7 50 84.0
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 2.9e-17 91.7 50 86.0
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 3.8e-17 91.3 50 86.0
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 3.8e-17 91.3 50 86.0
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 3.8e-17 91.3 50 84.0
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 3.8e-17 91.3 50 84.0
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 3.8e-17 91.3 50 86.0
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 3.8e-17 91.3 54 79.6
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 5.0e-17 90.9 50 86.0
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 5.0e-17 90.9 50 86.0
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 5.0e-17 90.9 50 86.0
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 5.0e-17 90.9 52 82.7
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 6.5e-17 90.5 50 86.0
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.5e-17 90.5 50 84.0
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 6.5e-17 90.5 51 78.4
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 6.5e-17 90.5 50 86.0
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 8.5e-17 90.1 50 82.0
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 8.5e-17 90.1 50 80.0
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 8.5e-17 90.1 50 84.0
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 8.5e-17 90.1 50 84.0
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 8.5e-17 90.1 50 82.0
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 8.5e-17 90.1 50 84.0
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 8.5e-17 90.1 50 84.0
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 1.1e-16 89.7 50 84.0
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.1e-16 89.7 50 84.0
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.1e-16 89.7 51 82.4
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 1.1e-16 89.7 50 84.0
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.1e-16 89.7 50 84.0
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 1.5e-16 89.4 50 82.0
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.5e-16 89.4 50 80.0
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.9e-16 89.0 53 79.2
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.9e-16 89.0 50 82.0
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 4.2e-16 87.8 50 82.0
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 4.2e-16 87.8 46 89.1
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 4.2e-16 87.8 50 80.0
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 5.5e-16 87.4 50 82.0
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 5.5e-16 87.4 50 82.0
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 5.5e-16 87.4 47 85.1
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 5.5e-16 87.4 47 85.1
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 5.5e-16 87.4 50 80.0
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 5.5e-16 87.4 49 79.6
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 7.2e-16 87.0 50 80.0
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 9.4e-16 86.7 50 80.0
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 9.4e-16 86.7 50 80.0
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 9.4e-16 86.7 50 80.0
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.6e-15 85.9 50 78.0
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.1e-15 85.5 57 68.4
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.1e-15 85.5 57 68.4
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.7e-15 85.1 50 76.0
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 4.7e-15 84.3 50 78.0
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 6.1e-15 84.0 50 76.0
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.4e-14 82.8 46 82.6
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.4e-14 82.8 49 77.6
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 3.0e-14 81.6 50 74.0
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 5.2e-14 80.9 50 74.0
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 1.2e-13 79.7 50 74.0
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 4.4e-13 77.8 50 70.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 5.7e-13 77.4 50 70.0
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-11 73.2 70 50.0
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-11 73.2 70 50.0
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.8e-11 72.4 49 67.3
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.8e-11 72.4 50 66.0
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 1.3e-09 66.2 50 60.0
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.5e-08 62.8 58 48.3
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 4.2e-08 61.2 78 44.9
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 2.3e-06 55.5 47 66.0
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 4.0e-06 54.7 52 59.6
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 8.8e-06 53.5 73 49.3


User provided reference genes

Program Settings