Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 4.4e-98 361.3 184 100.0
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 3.0e-62 242.3 253 58.5
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 1.5e-42 176.8 257 44.0
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 1.1e-40 170.6 261 42.5
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 2.1e-39 166.4 257 40.9
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 4.6e-39 165.2 263 40.7
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 1.0e-38 164.1 257 40.5
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 7.4e-37 157.9 257 39.3
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.3e-36 157.1 257 39.3
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 1.6e-36 156.8 257 39.3
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 2.1e-36 156.4 232 43.1
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 5.3e-35 151.8 257 38.9
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.2e-34 150.6 257 37.7
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 1.5e-34 150.2 263 37.6
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 1.5e-34 150.2 254 37.4
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 4.5e-34 148.7 256 38.3
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 4.5e-34 148.7 257 38.9
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 4.5e-34 148.7 255 38.8
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 5.8e-34 148.3 257 39.3
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.0e-33 147.5 256 39.5
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 1.0e-33 147.5 263 39.5
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 2.2e-33 146.4 258 38.4
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 2.2e-33 146.4 257 38.1
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 2.9e-33 146.0 259 37.8
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 2.9e-33 146.0 249 39.0
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 5.0e-33 145.2 235 39.1
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 5.0e-33 145.2 257 38.5
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 6.5e-33 144.8 257 37.0
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 6.5e-33 144.8 257 37.0
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 8.4e-33 144.4 233 40.8
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 1.1e-32 144.1 232 39.7
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 1.1e-32 144.1 245 39.6
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 1.1e-32 144.1 257 37.7
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.4e-32 143.7 257 38.1
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 1.9e-32 143.3 235 39.6
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 2.5e-32 142.9 263 38.0
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 3.2e-32 142.5 259 38.6
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 3.2e-32 142.5 257 37.7
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 4.2e-32 142.1 262 37.0
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 4.2e-32 142.1 238 40.3
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 4.2e-32 142.1 235 39.1
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 5.5e-32 141.7 248 37.1
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 7.2e-32 141.4 257 35.8
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 7.2e-32 141.4 233 39.1
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 9.3e-32 141.0 258 38.0
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.2e-31 140.6 256 35.2
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 1.6e-31 140.2 263 36.9
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 3.5e-31 139.0 251 37.1
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 3.5e-31 139.0 257 35.0
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 4.6e-31 138.7 268 38.4
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 6.1e-31 138.3 256 37.5
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 6.1e-31 138.3 248 36.3
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 7.9e-31 137.9 261 36.0
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 7.9e-31 137.9 247 37.7
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 1.0e-30 137.5 265 37.0
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 1.0e-30 137.5 257 36.2
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 1.3e-30 137.1 253 36.8
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.3e-30 137.1 262 37.0
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.8e-30 136.7 247 36.8
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 2.3e-30 136.3 233 39.5
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.3e-30 136.3 233 39.5
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.3e-30 136.3 233 39.5
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 3.9e-30 135.6 255 36.5
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 8.7e-30 134.4 257 35.4
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 8.7e-30 134.4 262 36.6
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 1.5e-29 133.7 255 36.1
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 1.9e-29 133.3 250 36.0
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 1.9e-29 133.3 255 36.1
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 3.3e-29 132.5 255 34.9
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 9.7e-29 131.0 249 36.5
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.3e-28 130.6 233 36.5
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 1.6e-28 130.2 247 34.8
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 2.2e-28 129.8 260 34.2
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 3.7e-28 129.0 261 35.2
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 3.7e-28 129.0 261 34.9
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 4.8e-28 128.6 261 34.9
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 4.8e-28 128.6 251 35.5
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 6.3e-28 128.3 255 34.9
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 1.8e-27 126.7 172 41.3
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 2.4e-27 126.3 166 43.4
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 5.3e-27 125.2 234 35.0
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 5.3e-27 125.2 234 35.0
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 5.3e-27 125.2 234 35.0
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 9.0e-27 124.4 232 35.3
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 9.0e-27 124.4 232 35.3
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 9.0e-27 124.4 232 35.3
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 3.4e-26 122.5 232 37.1
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 7.7e-26 121.3 234 35.5
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 5.0e-25 118.6 260 34.6
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 8.5e-25 117.9 195 38.5
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 8.5e-25 117.9 254 32.3
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.4e-24 117.1 253 33.6
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 1.2e-23 114.0 248 35.1
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 3.6e-23 112.5 195 37.9
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 1.0e-22 110.9 229 34.5
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 3.0e-22 109.4 103 51.5
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.0e-17 94.4 260 30.4
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 1.7e-17 93.6 213 33.8
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 1.7e-17 93.6 134 43.3
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.2e-17 93.2 260 30.0
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 1.2e-15 87.4 110 44.5
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 1.6e-15 87.0 193 32.6
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 2.1e-15 86.7 232 31.9
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 3.0e-14 82.8 215 32.6
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 3.9e-14 82.4 204 33.8
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 6.7e-14 81.6 213 28.6
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 8.8e-14 81.3 165 32.7
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 7.4e-13 78.2 168 32.7
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 1.8e-11 73.6 117 39.3
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 4.1e-11 72.4 190 29.5
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 5.9e-10 68.6 263 26.2
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 7.7e-10 68.2 189 31.2
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.8e-09 65.9 124 36.3
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.1e-08 64.3 33 84.8
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.2e-07 60.8 234 24.8
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 3.0e-06 56.2 223 28.7


User provided reference genes

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