Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 0.0e+00 1416.7 731 100.0
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.1e-223 779.6 750 59.5
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.5e-223 778.9 746 59.8
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 7.3e-221 771.2 748 59.1
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.5e-218 763.5 804 56.2
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.4e-210 735.3 721 58.3
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.1e-189 667.5 775 52.8
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.5e-181 640.6 746 53.2
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 4.8e-180 635.6 716 52.4
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.4e-176 624.0 737 51.8
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 6.1e-175 618.6 735 50.9
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.0e-174 617.8 713 52.0
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 6.7e-174 615.1 742 52.3
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 6.7e-174 615.1 742 52.3
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 5.9e-170 602.1 767 48.9
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 6.5e-169 598.6 709 50.5
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.1e-168 597.8 714 51.7
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 9.4e-168 594.7 733 48.8
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 3.6e-167 592.8 702 50.3
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.6e-167 592.8 706 50.0
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 4.7e-167 592.4 736 49.5
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 6.1e-167 592.0 677 51.6
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.0e-166 591.3 729 49.5
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.4e-166 590.9 704 50.1
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 1.4e-166 590.9 733 50.5
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.3e-166 590.1 703 50.8
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 2.6e-165 586.6 739 49.0
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 4.4e-165 585.9 711 51.2
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.8e-164 583.2 703 49.6
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.7e-164 582.8 741 49.8
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.8e-164 582.4 710 50.3
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.8e-164 582.4 690 51.0
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 8.2e-164 581.6 703 50.2
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.4e-163 580.9 689 50.9
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.4e-163 580.9 703 49.5
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.5e-162 576.2 706 49.4
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.5e-162 576.2 711 50.2
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 5.9e-162 575.5 711 49.5
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 5.9e-162 575.5 675 52.9
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 7.7e-162 575.1 739 48.0
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.5e-160 570.1 738 49.7
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.2e-160 569.3 727 50.3
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 1.2e-159 567.8 708 49.9
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 2.1e-159 567.0 709 49.4
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.3e-158 563.5 717 48.5
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 4.0e-158 562.8 699 49.5
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 8.8e-158 561.6 741 48.0
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.3e-156 557.8 749 48.9
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 3.1e-155 553.1 749 47.4
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 5.3e-155 552.4 743 46.6
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 5.9e-154 548.9 702 49.1
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.0e-153 548.1 716 48.0
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 1.7e-153 547.4 735 46.8
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 2.2e-153 547.0 711 47.8
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 5.0e-153 545.8 730 47.0
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 5.0e-153 545.8 708 47.6
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.5e-152 544.3 711 48.2
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 1.8e-150 537.3 732 46.9
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 3.4e-149 533.1 704 47.7
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 2.7e-146 523.5 744 46.5
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 2.7e-146 523.5 669 48.4
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 3.8e-145 519.6 670 47.9
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 8.5e-145 518.5 699 46.6
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.5e-144 516.9 658 49.1
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 4.2e-144 516.2 744 44.9
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 5.5e-144 515.8 658 47.7
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 7.2e-144 515.4 694 47.0
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.8e-142 510.8 671 47.8
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 6.8e-142 508.8 729 45.5
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.0e-137 495.0 719 45.3
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 1.3e-137 494.6 708 45.2
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 2.3e-134 483.8 638 47.5
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 4.0e-134 483.0 682 45.7
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.2e-133 481.5 682 45.6
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 4.4e-133 479.6 741 44.5
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 2.2e-132 477.2 732 43.4
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 3.2e-131 473.4 697 43.8
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.2e-130 471.5 631 46.8
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 3.5e-130 469.9 736 41.8
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 7.3e-128 462.2 495 54.1
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 4.7e-127 459.5 704 44.3
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.8e-126 457.6 735 42.9
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 9.2e-123 445.3 755 41.7
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 6.0e-122 442.6 700 42.7
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.0e-121 440.3 631 44.4
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 5.6e-120 436.0 621 45.7
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 6.2e-119 432.6 703 43.4
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.2e-117 428.3 588 46.1
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.6e-114 417.9 723 41.8
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 4.7e-111 406.4 703 39.8
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.1e-110 405.2 724 40.5
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 1.4e-110 404.8 665 42.1
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 1.2e-106 391.7 714 40.2
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 5.1e-105 386.3 648 40.9
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.9e-104 384.4 735 38.1
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 4.7e-103 379.8 735 38.6
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 2.4e-102 377.5 713 39.6
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 3.4e-101 373.6 735 38.5
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 5.8e-101 372.9 672 40.3
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 6.4e-100 369.4 613 43.1
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.7e-97 361.3 621 40.7
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 1.3e-95 355.1 682 39.1
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 9.0e-94 349.0 473 48.4
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.7e-92 344.7 503 44.7
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 2.4e-91 340.9 606 40.8
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 2.1e-90 337.8 701 38.2
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 2.1e-90 337.8 701 38.2
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 3.5e-90 337.0 450 50.0
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 3.5e-90 337.0 328 57.6
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 1.0e-89 335.5 512 42.4
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.3e-89 335.1 698 37.7
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 6.0e-82 309.7 662 38.4
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 6.5e-76 289.7 533 39.0
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 4.6e-74 283.5 654 36.7
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.1e-72 278.9 515 39.6
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 2.1e-71 274.6 243 59.3
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.1e-62 243.8 321 44.9
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 3.0e-57 227.6 298 43.6
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.8e-46 191.8 465 32.0
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.7e-44 185.3 271 40.6
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 8.0e-42 176.4 136 67.6
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 8.8e-41 172.9 303 41.3
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 8.8e-41 172.9 163 57.1
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 2.0e-40 171.8 604 30.8
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-39 169.1 127 68.5
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 4.1e-38 164.1 300 35.0
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 4.1e-38 164.1 198 48.0
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 1.7e-36 158.7 119 66.4
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.9e-36 157.9 137 59.9
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 3.7e-31 141.0 198 43.4
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 1.2e-29 136.0 141 54.6
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 1.1e-27 129.4 157 50.3
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 3.6e-26 124.4 475 28.6
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 6.1e-26 123.6 85 72.9
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 1.4e-25 122.5 149 47.0
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.4e-22 112.5 73 71.2
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.7e-21 108.2 175 40.6
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.1e-19 102.8 344 30.8
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 8.0e-18 96.7 109 46.8
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.0e-16 92.0 97 53.6
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 7.5e-16 90.1 72 56.9
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.3e-12 79.3 65 63.1
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 2.3e-12 78.6 107 49.5
Sc11g0006970 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.3e-12 78.6 102 45.1
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 8.6e-12 76.6 91 53.8
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 1.2e-10 72.8 144 34.7
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 8.0e-10 70.1 55 63.6
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 8.3e-07 60.1 41 63.4


User provided reference genes

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