Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 0.0e+00 1237.2 615 100.0
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 7.0e-217 757.7 626 62.6
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.1e-209 733.8 627 62.0
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.0e-199 700.7 635 57.8
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 8.6e-199 697.6 578 62.3
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.5e-179 633.6 632 54.6
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.2e-177 625.5 620 52.4
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 9.3e-177 624.4 633 53.2
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.3e-175 619.8 627 54.1
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 3.9e-175 619.0 633 52.9
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 6.7e-175 618.2 625 53.6
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 8.7e-175 617.8 638 51.9
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.5e-174 617.1 641 52.9
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 9.6e-174 614.4 642 52.3
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 6.2e-173 611.7 630 52.1
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 8.2e-173 611.3 625 53.4
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 3.1e-172 609.4 626 52.9
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 2.0e-171 606.7 634 52.4
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.2e-170 603.2 635 50.1
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 2.2e-170 603.2 621 52.2
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 4.9e-170 602.1 635 52.0
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 4.9e-170 602.1 634 50.9
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 8.4e-170 601.3 633 52.8
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.1e-169 600.9 627 53.4
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 3.2e-169 599.4 625 53.1
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 5.5e-169 598.6 672 49.7
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 2.7e-168 596.3 645 49.9
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.5e-168 595.9 630 51.1
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 3.5e-168 595.9 623 52.5
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 6.0e-168 595.1 630 53.3
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 7.9e-168 594.7 635 50.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.3e-167 594.0 632 51.7
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 1.8e-167 593.6 629 51.5
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.8e-167 593.6 636 52.2
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.8e-167 593.6 617 52.4
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.3e-167 593.2 636 52.0
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 3.0e-167 592.8 623 51.8
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 6.7e-167 591.7 619 50.7
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 8.7e-167 591.3 633 50.1
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 1.1e-166 590.9 632 49.8
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.5e-166 590.5 626 51.3
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.9e-166 590.1 631 50.6
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 2.5e-166 589.7 623 49.9
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 5.7e-166 588.6 624 50.6
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 4.8e-165 585.5 628 49.7
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.4e-164 583.2 643 50.4
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 5.3e-164 582.0 570 55.6
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 5.3e-164 582.0 612 51.6
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 6.9e-164 581.6 633 50.7
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.2e-163 580.9 637 50.7
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.2e-163 580.9 630 49.5
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.5e-161 572.0 678 46.9
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 6.1e-160 568.5 624 49.0
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.8e-159 567.0 589 52.1
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.9e-159 565.8 577 53.7
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 8.8e-159 564.7 624 51.3
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.5e-158 563.9 622 49.8
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.8e-157 559.7 564 52.0
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 4.8e-157 558.9 634 50.3
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 1.8e-156 557.0 638 48.7
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.8e-156 557.0 645 48.4
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.2e-155 554.3 626 47.9
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 2.6e-155 553.1 643 48.7
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 7.7e-155 551.6 522 55.7
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 5.0e-154 548.9 548 54.9
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 8.5e-154 548.1 630 48.7
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 5.5e-153 545.4 528 56.1
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.7e-152 543.1 620 48.5
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 2.7e-152 543.1 637 48.8
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.0e-151 541.2 595 48.2
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 1.8e-151 540.4 625 47.2
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.8e-151 540.4 641 46.5
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.0e-151 539.7 637 46.5
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 5.1e-151 538.9 620 47.1
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.5e-150 537.3 637 47.3
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.5e-150 537.3 629 48.0
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.5e-150 537.3 629 48.3
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 2.0e-150 537.0 625 47.0
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 3.3e-150 536.2 586 49.5
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 7.4e-150 535.0 494 58.1
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.7e-149 533.9 647 49.1
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 2.2e-149 533.5 641 48.2
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 3.7e-149 532.7 587 52.1
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 4.8e-149 532.3 624 47.9
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 6.3e-149 531.9 627 48.0
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 6.3e-149 531.9 616 48.9
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.1e-148 531.2 632 46.8
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.8e-148 530.4 628 46.5
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.8e-148 530.4 628 46.5
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.4e-148 530.0 626 46.6
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 2.4e-148 530.0 579 48.0
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 5.3e-148 528.9 628 46.3
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 5.3e-148 528.9 630 46.0
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 9.1e-148 528.1 618 46.9
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 2.6e-147 526.6 626 47.1
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.7e-146 523.9 627 46.7
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 3.8e-146 522.7 627 48.2
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 6.5e-146 521.9 629 45.9
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 6.5e-146 521.9 629 45.9
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 8.5e-146 521.5 628 46.2
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 4.2e-145 519.2 658 44.2
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 9.4e-145 518.1 667 45.6
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 4.7e-144 515.8 622 48.4
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.1e-144 515.4 636 45.6
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 2.6e-142 510.0 644 46.6
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.6e-142 510.0 505 54.5
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.3e-142 509.6 629 46.4
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 3.3e-142 509.6 564 49.1
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 4.4e-142 509.2 652 46.9
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 4.4e-142 509.2 621 45.6
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.3e-141 507.7 702 43.7
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 8.2e-141 505.0 635 47.7
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 5.3e-140 502.3 592 49.0
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 5.9e-139 498.8 497 52.9
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 4.2e-137 492.7 484 53.7
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 6.1e-136 488.8 626 47.0
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.1e-136 488.8 564 47.7
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.0e-135 488.0 484 53.7
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.4e-135 487.6 613 45.2
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 9.7e-134 481.5 487 52.8
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 2.4e-132 476.9 532 51.5
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 5.9e-131 472.2 506 50.6
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 3.2e-129 466.5 653 43.5
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 5.5e-129 465.7 531 48.8
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.2e-120 438.0 627 41.1
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 2.0e-118 430.6 631 41.0
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 2.5e-113 413.7 502 47.4
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.3e-113 412.9 471 47.3
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.3e-113 412.9 471 47.3
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 8.9e-111 405.2 422 50.0
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 4.1e-108 396.4 478 45.4
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 7.0e-108 395.6 636 40.6
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 9.2e-108 395.2 702 38.7
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 3.1e-103 380.2 379 51.5
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.2e-91 341.7 493 43.0
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 8.6e-90 335.5 502 41.6
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.6e-80 304.7 620 35.5
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 6.9e-71 272.7 487 37.2
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 4.2e-68 263.5 674 31.3
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 7.1e-60 236.1 371 40.7
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 5.7e-49 199.9 171 55.6
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.8e-47 194.9 194 47.9
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 3.6e-43 180.6 297 40.1
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.8e-32 143.7 113 61.1
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 4.8e-24 117.1 247 33.2
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.1e-20 105.9 64 73.4
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.2e-17 95.9 155 40.0
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-08 64.7 39 74.4


User provided reference genes

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