Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.4e-284 982.2 489 100.0
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 7.3e-217 757.3 489 76.5
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 3.4e-206 721.8 477 73.0
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 9.9e-206 720.3 473 75.1
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.9e-204 716.1 473 74.8
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 5.1e-202 708.0 474 74.7
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 5.6e-201 704.5 467 71.5
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 5.8e-198 694.5 494 67.8
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 4.9e-197 691.4 471 69.4
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 2.3e-194 682.6 489 67.1
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 6.7e-194 681.0 577 62.2
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.5e-193 679.9 471 69.0
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.3e-192 676.8 461 69.6
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.3e-192 676.8 474 67.7
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 3.7e-192 675.2 474 68.4
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 5.3e-191 671.4 493 66.9
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 6.9e-191 671.0 465 68.6
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 9.0e-191 670.6 472 67.8
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 5.8e-190 667.9 454 68.7
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 5.8e-190 667.9 471 67.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.7e-189 666.4 475 67.2
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.2e-189 666.0 466 68.5
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 6.5e-189 664.5 475 66.7
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 6.5e-189 664.5 471 65.6
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.9e-188 662.9 475 66.7
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.5e-188 662.5 474 67.9
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.2e-188 661.8 475 66.5
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.2e-188 661.8 475 66.5
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.5e-188 661.4 473 67.0
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.1e-188 661.0 466 68.0
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 9.3e-188 660.6 468 67.7
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.2e-187 660.2 455 67.9
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.2e-187 660.2 461 68.8
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.6e-187 659.8 472 66.1
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 3.5e-187 658.7 468 68.6
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 4.6e-187 658.3 472 67.8
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.0e-187 657.9 473 67.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 6.0e-187 657.9 471 65.0
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.9e-187 657.5 475 66.1
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 7.9e-187 657.5 469 67.2
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.8e-186 656.4 466 66.1
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 2.3e-186 656.0 474 65.2
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.3e-186 656.0 471 65.0
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 6.7e-186 654.4 453 67.5
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.9e-185 652.9 474 66.2
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.5e-185 652.5 463 67.4
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.5e-185 652.5 474 65.0
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 7.4e-185 651.0 471 65.6
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.3e-184 650.2 491 65.0
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.6e-184 649.8 467 66.4
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 2.8e-184 649.0 463 67.0
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 6.2e-184 647.9 468 66.9
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.1e-183 647.1 461 66.8
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 1.1e-183 647.1 458 66.6
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 3.1e-183 645.6 458 66.4
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.1e-183 645.6 473 67.2
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 5.3e-183 644.8 463 65.2
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 6.9e-183 644.4 467 66.4
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 9.0e-183 644.0 502 62.4
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 5.8e-182 641.3 441 67.3
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 2.9e-181 639.0 478 63.4
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.8e-181 638.6 438 67.6
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.9e-180 636.3 462 64.7
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 2.5e-180 636.0 461 65.3
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 3.2e-180 635.6 469 65.7
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 5.5e-180 634.8 457 66.5
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.2e-179 633.6 473 64.1
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.6e-179 633.3 460 65.2
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 2.1e-179 632.9 507 61.7
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.6e-179 631.7 465 64.3
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 6.1e-179 631.3 451 64.7
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.3e-178 630.2 490 63.7
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.8e-178 629.8 419 70.6
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.8e-178 629.8 491 61.5
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 3.0e-178 629.0 457 63.7
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.1e-177 627.1 463 64.8
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 2.5e-177 625.9 461 64.2
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 7.4e-177 624.4 462 63.4
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 9.7e-177 624.0 493 62.5
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 1.3e-176 623.6 449 64.4
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 2.2e-176 622.9 462 63.0
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 2.2e-176 622.9 439 66.5
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 6.3e-176 621.3 461 65.5
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.4e-175 620.2 455 64.2
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 9.0e-175 617.5 465 63.4
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.5e-174 616.7 465 63.0
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 3.4e-174 615.5 465 63.0
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.3e-173 613.6 465 62.4
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 8.5e-173 610.9 440 65.2
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.1e-172 610.5 470 62.6
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.2e-171 607.1 464 61.9
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.2e-171 607.1 562 55.5
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.6e-171 606.7 448 63.4
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.1e-171 606.3 471 61.4
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.4e-170 603.6 473 62.4
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 3.0e-170 602.4 457 63.2
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 3.0e-170 602.4 533 57.0
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 7.4e-169 597.8 460 61.5
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 9.7e-169 597.4 468 62.4
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.3e-168 597.0 434 66.1
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.2e-168 596.3 426 66.4
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 6.3e-168 594.7 467 61.2
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.4e-167 592.8 450 61.8
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 4.1e-167 592.0 433 63.0
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 5.3e-167 591.7 462 61.3
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 3.4e-166 589.0 530 55.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 4.5e-166 588.6 471 61.6
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 7.7e-166 587.8 454 61.7
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 7.7e-166 587.8 454 61.7
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 7.7e-166 587.8 454 61.7
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.0e-165 587.4 492 57.7
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.7e-165 586.6 433 62.6
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 3.8e-165 585.5 450 61.1
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 8.5e-165 584.3 481 59.0
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 8.5e-165 584.3 475 60.2
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-164 583.6 481 59.0
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.9e-164 583.2 498 58.6
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.2e-164 582.4 460 62.0
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.2e-163 580.5 433 62.1
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 4.7e-163 578.6 489 60.5
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.0e-162 575.9 387 69.0
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.9e-162 575.5 472 62.1
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-161 573.9 381 69.0
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 7.4e-161 571.2 472 59.5
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 5.9e-158 561.6 433 60.7
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 6.5e-157 558.1 433 63.3
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.5e-156 556.2 472 59.1
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 2.1e-155 553.1 468 59.0
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.7e-155 552.7 409 62.6
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 3.6e-155 552.4 439 61.0
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 5.2e-154 548.5 491 57.2
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 8.8e-154 547.7 598 48.0
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 9.7e-153 544.3 432 61.6
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 2.1e-139 500.0 474 51.9
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.6e-134 483.8 459 53.6
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 5.2e-130 468.8 446 54.7
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.2e-129 467.6 458 49.3
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 5.7e-129 465.3 472 49.6
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.3e-125 453.4 383 57.7
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.7e-123 445.7 334 65.0
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.9e-120 436.4 402 51.7
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 8.3e-120 434.9 462 48.5
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 3.9e-109 399.4 527 43.5
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.1e-108 397.9 299 63.2
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.2e-94 351.3 262 64.9
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 4.5e-81 306.2 296 51.7
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.3e-68 263.5 178 64.6
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 8.2e-59 232.3 192 57.3
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 6.3e-51 206.1 159 61.6
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 2.4e-50 204.1 212 49.5
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 6.1e-46 189.5 315 35.9
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.2e-40 171.0 434 30.0
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.9e-39 167.9 100 79.0
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 7.7e-33 146.0 149 52.3
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 9.4e-31 139.0 106 56.6
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 2.3e-29 134.4 112 62.5
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 4.0e-29 133.7 108 63.9
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.8e-26 124.8 113 53.1
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 7.7e-25 119.4 78 69.2
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-24 118.2 86 62.8
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 4.0e-21 107.1 99 49.5
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.5e-20 105.1 71 63.4
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 2.6e-20 104.4 76 60.5
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.0e-17 94.7 60 68.3
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.0e-16 90.1 110 50.9
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 1.9e-15 88.2 88 59.1
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.7e-11 73.9 47 70.2
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.0e-09 68.2 59 59.3
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 2.3e-08 64.7 69 52.2
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 5.0e-08 63.5 69 52.2
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.6e-08 63.2 45 62.2
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.2e-06 58.9 39 69.2


User provided reference genes

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