Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 6.6e-156 553.9 261 100.0
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 1.0e-92 344.0 319 57.7
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.3e-92 342.8 309 58.3
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.5e-91 340.1 310 57.4
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 4.3e-91 338.6 314 57.3
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 4.3e-91 338.6 314 57.6
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 3.7e-90 335.5 316 56.0
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.1e-89 334.0 310 56.5
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.4e-89 333.6 321 56.7
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 9.0e-89 330.9 313 55.6
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 1.2e-88 330.5 312 54.5
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 1.5e-88 330.1 308 55.8
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.0e-88 329.7 318 55.0
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 2.6e-88 329.3 308 55.8
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.6e-88 329.3 318 54.4
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 4.5e-88 328.6 307 55.7
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 5.9e-88 328.2 308 55.2
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 7.6e-88 327.8 311 56.6
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 1.0e-87 327.4 308 55.5
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 1.0e-87 327.4 320 53.4
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.7e-87 326.6 312 55.8
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 2.2e-87 326.2 308 55.2
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 2.2e-87 326.2 316 55.4
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 2.9e-87 325.9 312 55.4
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 3.8e-87 325.5 321 54.5
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 6.5e-87 324.7 312 55.1
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 6.5e-87 324.7 312 54.5
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 8.4e-87 324.3 315 54.6
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 8.4e-87 324.3 316 55.4
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 1.1e-86 323.9 306 56.2
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 1.1e-86 323.9 318 54.4
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.4e-86 323.6 306 56.2
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 2.5e-86 322.8 312 53.8
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 4.2e-86 322.0 315 54.9
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.2e-86 322.0 306 54.2
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 7.2e-86 321.2 321 54.2
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 1.2e-85 320.5 314 52.9
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 1.6e-85 320.1 316 55.4
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.6e-85 320.1 318 54.1
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 2.1e-85 319.7 312 54.2
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 3.5e-85 318.9 319 53.9
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 4.6e-85 318.5 332 52.4
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 6.1e-85 318.2 315 54.3
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 6.1e-85 318.2 322 53.4
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.1e-85 318.2 314 56.4
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.1e-85 318.2 314 56.4
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 7.9e-85 317.8 316 54.4
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 1.3e-84 317.0 314 56.1
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 2.3e-84 316.2 319 51.4
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 3.0e-84 315.8 317 54.3
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 3.9e-84 315.5 320 53.4
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 5.1e-84 315.1 327 53.5
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 5.1e-84 315.1 309 57.3
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 5.1e-84 315.1 307 56.7
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 5.1e-84 315.1 313 53.4
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 6.7e-84 314.7 318 52.2
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 3.3e-83 312.4 354 50.0
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 5.7e-83 311.6 318 52.8
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.3e-82 310.5 310 51.6
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 2.8e-82 309.3 315 53.7
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 3.7e-82 308.9 270 59.6
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 4.8e-82 308.5 310 51.6
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 4.8e-82 308.5 318 52.8
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 6.3e-82 308.1 318 51.6
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.4e-81 307.0 311 52.1
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.4e-81 307.0 313 54.6
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 2.4e-81 306.2 303 53.5
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 2.0e-80 303.1 289 54.7
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 3.4e-80 302.4 315 50.8
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 4.5e-80 302.0 312 52.6
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.0e-79 300.8 320 53.1
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 1.3e-79 300.4 309 49.8
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 6.5e-79 298.1 311 50.8
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 1.1e-78 297.4 313 50.8
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 4.2e-78 295.4 228 66.7
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 4.2e-78 295.4 308 52.3
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.6e-77 293.5 269 59.5
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 3.6e-77 292.4 318 50.0
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 3.6e-77 292.4 361 46.3
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 6.1e-77 291.6 326 49.1
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.3e-76 289.7 318 50.0
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 9.7e-75 284.3 314 51.3
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.7e-74 282.3 312 51.3
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 5.3e-73 278.5 305 50.2
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 2.2e-71 273.1 251 56.2
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 5.0e-71 271.9 211 65.4
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.1e-70 270.8 231 60.6
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.6e-69 266.9 190 68.9
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 3.1e-65 252.7 172 73.3
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 9.1e-65 251.1 318 46.2
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 4.5e-64 248.8 326 43.6
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.9e-63 246.1 315 47.6
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 4.2e-62 242.3 330 43.3
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 4.4e-59 232.3 207 57.0
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 3.7e-58 229.2 329 44.4
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 4.8e-58 228.8 291 46.4
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 8.2e-58 228.0 311 40.5
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 1.1e-57 227.6 302 44.0
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 3.1e-57 226.1 174 64.4
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 3.5e-56 222.6 298 43.3
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 3.2e-54 216.1 312 42.9
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 4.7e-53 212.2 174 61.5
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 4.0e-52 209.1 207 50.7
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 6.8e-52 208.4 203 55.2
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 1.7e-50 203.8 253 45.8
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 1.2e-48 197.6 320 40.6
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 3.5e-48 196.1 241 43.6
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 6.8e-44 181.8 162 58.0
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 1.3e-42 177.6 125 67.2
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.2e-40 171.0 143 62.2
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 7.3e-38 161.8 113 65.5
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.6e-37 160.6 130 61.5
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 4.4e-35 152.5 124 59.7
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.0e-31 139.8 276 35.5
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.1e-30 137.9 170 45.3
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 1.2e-29 134.4 165 43.6
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 6.2e-29 132.1 213 37.1
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 3.1e-28 129.8 146 47.9
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 2.6e-27 126.7 207 39.6
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.8e-21 106.7 193 38.3
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 5.8e-19 99.0 88 58.0
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 2.2e-18 97.1 61 70.5
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.4e-17 94.4 136 39.0
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 5.4e-17 92.4 53 77.4
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 6.0e-16 89.0 56 66.1
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 1.0e-15 88.2 76 53.9
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 3.9e-15 86.3 51 76.5
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 1.6e-08 64.3 168 28.0
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 6.6e-07 58.9 36 66.7
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 1.5e-06 57.8 42 61.9
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 4.3e-06 56.2 31 77.4


User provided reference genes

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