Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 0.0e+00 1138.6 654 100.0
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 3.4e-177 625.9 651 58.7
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 9.3e-159 564.7 449 70.4
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 7.4e-156 555.1 475 65.7
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 4.6e-150 535.8 518 62.0
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 1.0e-149 534.6 686 51.7
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 2.2e-147 526.9 682 51.9
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 2.5e-143 513.5 669 52.5
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 4.6e-142 509.2 669 52.2
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 3.4e-137 493.0 691 49.8
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 1.3e-136 491.1 685 51.1
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 5.0e-136 489.2 676 50.1
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 4.2e-135 486.1 689 49.6
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 1.6e-134 484.2 681 49.3
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 3.6e-134 483.0 674 50.0
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 6.1e-134 482.3 533 57.8
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 1.0e-133 481.5 690 48.0
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 3.0e-133 479.9 399 69.2
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 3.0e-133 479.9 689 50.5
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.0e-132 477.2 691 49.5
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.7e-131 474.2 705 48.2
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 1.7e-131 474.2 677 48.6
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 2.8e-131 473.4 689 49.2
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.1e-130 471.5 688 48.1
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.5e-129 467.6 507 57.6
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 3.4e-129 466.5 689 48.8
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.9e-128 463.4 705 48.8
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 8.5e-128 461.8 506 56.7
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 8.5e-128 461.8 689 48.8
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.2e-127 459.9 703 48.4
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 4.2e-127 459.5 506 58.5
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 7.2e-127 458.8 730 47.5
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.6e-126 457.6 670 49.6
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.1e-126 457.2 501 58.7
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 8.0e-126 455.3 680 47.6
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 1.0e-125 454.9 707 47.9
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.8e-125 454.1 499 57.5
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 3.9e-125 453.0 579 51.8
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 9.7e-124 448.4 679 47.6
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 2.2e-123 447.2 492 57.1
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 9.1e-122 441.8 673 47.7
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.6e-121 441.0 729 44.6
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 1.6e-121 441.0 488 56.8
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 2.0e-121 440.7 693 49.6
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 2.6e-121 440.3 672 47.3
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 7.7e-121 438.7 680 49.1
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 2.2e-120 437.2 708 45.3
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 2.9e-120 436.8 542 53.0
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 1.9e-119 434.1 654 47.9
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 4.7e-118 429.5 500 55.2
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 6.1e-118 429.1 712 47.1
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.4e-117 427.9 551 51.2
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 1.8e-117 427.6 481 56.8
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 2.3e-117 427.2 682 49.3
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 5.2e-117 426.0 766 42.8
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 6.7e-117 425.6 668 47.0
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 1.2e-116 424.9 382 65.7
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 2.6e-116 423.7 766 42.6
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 3.3e-116 423.3 514 52.7
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 2.8e-115 420.2 480 55.0
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 4.8e-115 419.5 673 46.2
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.8e-114 417.5 489 56.0
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 3.1e-114 416.8 688 44.6
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 1.2e-113 414.8 542 50.9
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 2.7e-113 413.7 497 53.3
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 4.5e-113 412.9 481 54.1
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 5.9e-113 412.5 666 46.7
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 7.7e-113 412.1 687 44.1
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 1.7e-112 411.0 659 44.9
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 5.0e-112 409.5 472 53.6
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 8.5e-112 408.7 512 50.8
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 3.2e-111 406.8 475 54.3
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 2.1e-110 404.1 451 55.2
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 2.7e-110 403.7 646 45.0
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.4e-109 401.4 476 53.8
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 1.4e-109 401.4 476 53.8
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 4.0e-109 399.8 485 53.6
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 5.2e-109 399.4 497 52.5
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 8.8e-109 398.7 520 49.0
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.5e-108 397.9 476 54.2
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.2e-105 388.3 482 52.1
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 1.6e-105 387.9 465 54.2
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 1.6e-105 387.9 465 54.2
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 2.3e-104 384.0 465 53.5
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 3.8e-104 383.3 483 52.4
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 3.3e-103 380.2 685 44.4
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 4.4e-100 369.8 739 39.9
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 9.8e-100 368.6 562 45.7
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 9.8e-100 368.6 712 41.4
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.3e-99 368.2 663 43.3
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 3.7e-99 366.7 544 46.7
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.9e-96 357.1 673 43.7
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 1.1e-95 355.1 481 49.3
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 5.6e-95 352.8 437 51.0
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 5.2e-85 319.7 624 38.9
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.2e-81 308.5 250 67.2
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.6e-81 308.1 284 60.6
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.3e-80 305.1 308 56.2
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 4.7e-78 296.6 247 67.2
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 1.6e-73 281.6 241 65.1
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 2.1e-73 281.2 620 37.3
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 1.6e-70 271.6 431 46.4
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 3.4e-68 263.8 481 44.5
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.4e-66 257.7 459 44.2
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 9.2e-66 255.8 458 44.1
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.5e-63 248.4 419 41.8
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 4.3e-55 220.3 464 36.4
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 1.1e-53 215.7 432 43.5
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.2e-52 212.2 233 51.5
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.3e-48 198.0 407 45.5
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.9e-47 194.9 179 60.9
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 4.0e-37 160.6 177 49.7
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 3.4e-36 157.5 119 68.9
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 1.0e-35 156.0 112 71.4
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.9e-34 151.8 129 60.5
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 4.2e-34 150.6 147 57.8
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 1.1e-29 136.0 274 44.2
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 9.0e-29 132.9 222 41.4
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 4.5e-20 104.0 354 26.0
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 2.5e-18 98.2 288 34.0
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 6.7e-16 90.1 72 66.7
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 1.4e-13 82.4 155 41.9
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 2.4e-13 81.6 65 66.2
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.2e-12 79.3 75 60.0
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.6e-09 67.8 89 53.9
Gohir.D10G229300 Gossypium hirsutum HOM05D000032 ORTHO05D005217 1.7e-06 58.9 166 30.7
Gorai.011G261800 Gossypium raimondii HOM05D000032 ORTHO05D005217 1.7e-06 58.9 166 30.7
Gohir.A10G219800 Gossypium hirsutum HOM05D000032 ORTHO05D005217 2.2e-06 58.5 166 30.7
CDE10G0325 Ceratophyllum demersum HOM05D000032 ORTHO05D005217 3.7e-06 57.8 129 31.8
Peaxi162Scf00991g00335 Petunia axillaris HOM05D006007 ORTHO05D007518 3.7e-06 57.8 63 54.0


User provided reference genes

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