Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.7e-103 379.4 201 100.0
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 7.8e-56 221.1 199 58.3
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.3e-55 220.3 199 56.8
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 6.6e-55 218.0 199 58.8
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.1e-54 217.2 199 58.3
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 7.3e-54 214.5 199 57.3
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 1.2e-53 213.8 198 55.6
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 8.0e-53 211.1 199 55.8
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 2.3e-52 209.5 199 55.8
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.2e-50 203.0 199 53.8
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 2.9e-50 202.6 200 53.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 4.1e-49 198.7 199 53.8
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.2e-48 197.2 200 53.0
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.2e-48 197.2 199 50.8
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 3.5e-48 195.7 199 54.8
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 3.5e-48 195.7 192 51.0
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 6.0e-48 194.9 199 50.3
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 7.8e-48 194.5 200 51.5
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.7e-47 193.4 198 52.5
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.0e-47 192.6 198 52.0
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.9e-47 192.2 198 52.0
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.9e-47 192.2 198 52.0
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 8.6e-47 191.0 199 48.2
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 8.6e-47 191.0 199 51.8
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.9e-46 189.9 199 50.8
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.9e-46 189.9 199 50.3
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 3.3e-46 189.1 197 47.7
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 4.3e-46 188.7 201 52.2
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.3e-46 188.7 199 53.3
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 7.3e-46 188.0 188 52.1
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 9.5e-46 187.6 199 47.2
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 1.2e-45 187.2 189 54.5
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.2e-45 187.2 198 50.5
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 4.7e-45 185.3 198 50.5
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 6.2e-45 184.9 199 49.7
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.1e-44 184.1 201 47.3
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 2.3e-44 183.0 199 50.8
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 5.2e-44 181.8 198 48.0
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 5.2e-44 181.8 199 49.7
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.2e-43 180.6 202 48.5
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 3.4e-43 179.1 190 50.0
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 5.8e-43 178.3 202 47.0
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 2.2e-42 176.4 198 50.0
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.9e-42 176.0 198 46.5
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 4.9e-42 175.3 199 50.8
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 4.9e-42 175.3 198 47.0
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.9e-41 173.3 199 47.7
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 3.2e-41 172.6 197 46.7
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 6.0e-40 168.3 192 49.0
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.0e-39 167.5 200 45.0
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.3e-39 166.4 200 40.5
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 2.3e-39 166.4 200 41.5
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 3.9e-39 165.6 201 41.8
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.1e-38 164.1 201 42.3
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 2.1e-37 159.8 192 45.3
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.1e-37 159.8 216 43.1
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.4e-35 152.5 200 37.5
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 3.4e-35 152.5 200 38.5
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.1e-33 147.5 148 55.4
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 7.8e-32 141.4 187 38.0
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 3.9e-31 139.0 273 33.7
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 4.3e-30 135.6 200 34.5
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.2e-29 134.0 195 35.4
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 2.1e-29 133.3 194 37.6
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 6.2e-29 131.7 200 34.0
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 6.2e-29 131.7 200 34.0
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 5.2e-28 128.6 200 33.0
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 5.2e-28 128.6 195 41.0
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 5.8e-27 125.2 200 32.0
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 4.9e-26 122.1 107 57.9
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 4.9e-26 122.1 191 37.2
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 6.4e-26 121.7 194 41.2
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 1.9e-25 120.2 202 34.7
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 3.5e-24 115.9 107 57.0
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 1.0e-23 114.4 107 55.1
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 2.3e-23 113.2 191 37.2
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 2.3e-23 113.2 107 55.1
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 8.7e-23 111.3 107 56.1
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 5.6e-22 108.6 159 40.3
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 7.3e-22 108.2 100 57.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.6e-21 107.1 107 52.3
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 1.6e-21 107.1 142 45.1
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.8e-21 106.3 91 57.1
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 4.7e-21 105.5 107 54.2
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 6.2e-21 105.1 107 52.3
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.1e-20 104.4 185 30.8
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.1e-20 104.4 101 55.4
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 1.4e-20 104.0 192 34.9
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 9.0e-20 101.3 107 50.5
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 2.6e-19 99.8 113 49.6
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 3.4e-19 99.4 107 50.5
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.4e-19 99.0 107 52.3
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 9.9e-19 97.8 107 47.7
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 9.9e-19 97.8 107 50.5
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 9.9e-19 97.8 100 51.0
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 1.3e-18 97.4 163 36.8
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 4.9e-18 95.5 107 47.7
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 8.4e-18 94.7 107 50.5
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 8.4e-18 94.7 107 49.5
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 2.4e-17 93.2 86 52.3
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.4e-17 93.2 107 49.5
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.2e-16 90.9 57 71.9
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 3.5e-16 89.4 79 59.5
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 4.6e-16 89.0 86 51.2
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 1.7e-15 87.0 107 41.1
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.3e-15 86.7 105 43.8
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 6.6e-15 85.1 107 44.9
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 5.6e-14 82.0 107 41.1
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 5.6e-14 82.0 60 65.0
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.3e-13 80.9 61 62.3
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.6e-13 80.5 57 64.9
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 2.1e-13 80.1 184 31.0
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 6.2e-13 78.6 92 39.1
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 8.1e-13 78.2 59 59.3
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 1.1e-12 77.8 108 39.8
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.1e-12 77.8 81 50.6
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 1.4e-12 77.4 84 50.0
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 4.0e-12 75.9 113 39.8
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 4.0e-12 75.9 137 32.1
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 4.0e-12 75.9 107 37.4
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 5.3e-12 75.5 107 40.2
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 5.3e-12 75.5 127 40.2
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 6.9e-12 75.1 58 62.1
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 9.0e-12 74.7 165 31.5
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 9.0e-12 74.7 81 49.4
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 9.0e-12 74.7 191 28.3
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 9.0e-12 74.7 58 55.2
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.2e-11 74.3 87 39.1
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.5e-11 73.9 81 48.1
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 2.6e-11 73.2 70 45.7
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 1.3e-10 70.9 56 51.8
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 1.7e-10 70.5 81 38.3
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 3.8e-10 69.3 57 56.1
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 4.9e-10 68.9 66 50.0
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 6.4e-10 68.6 81 37.0
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 8.4e-10 68.2 109 36.7
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 8.4e-10 68.2 107 38.3
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 1.1e-09 67.8 100 38.0
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.4e-09 67.4 127 38.6
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 5.4e-09 65.5 108 37.0
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 7.1e-09 65.1 108 37.0
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 1.6e-08 63.9 100 37.0
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 2.1e-08 63.5 108 38.0
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.1e-08 63.5 73 47.9
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 3.5e-08 62.8 52 53.8
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 3.5e-08 62.8 52 53.8
SMO364G0587 Selaginella moellendorffii HOM05D004264 ORTHO05D004680 3.5e-08 62.8 94 34.0
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 7.9e-08 61.6 100 35.0
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 2.3e-07 60.1 102 35.3
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-07 59.7 128 30.5
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-07 59.7 128 30.5


User provided reference genes

Program Settings